Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86804 * 120.00324 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46727 * 299.99805 * 3 2 1 6 6 H 1.48501 * 109.47119 * 59.99728 * 3 2 1 7 7 C 1.38858 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00055 * 190.70634 * 7 2 1 9 9 N 1.37206 * 119.99997 * 10.71540 * 7 2 1 10 10 C 1.37008 * 125.08697 * 21.22641 * 9 7 2 11 11 C 1.34303 * 109.92675 * 180.17161 * 10 9 7 12 12 C 1.46665 * 107.05010 * 359.60591 * 11 10 9 13 13 C 1.39521 * 133.96518 * 180.26597 * 12 11 10 14 14 C 1.37777 * 119.65305 * 179.97438 * 13 12 11 15 15 C 1.38751 * 120.36419 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.67488 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47275 * 89.99480 * 16 15 14 18 18 C 1.37896 * 120.64732 * 359.97438 * 15 14 13 19 19 C 1.38108 * 125.09178 * 200.95435 * 9 7 2 20 20 H 0.97003 * 119.99417 * 359.97438 * 1 2 3 21 21 H 1.07993 * 125.04215 * 0.02562 * 10 9 7 22 22 H 1.08000 * 126.47642 * 179.86320 * 11 10 9 23 23 H 1.08002 * 120.17233 * 359.95140 * 13 12 11 24 24 H 1.07996 * 119.82025 * 180.02562 * 14 13 12 25 25 H 1.09003 * 109.46883 * 209.99915 * 16 15 14 26 26 H 1.08995 * 109.46926 * 329.99181 * 16 15 14 27 27 H 0.96703 * 113.99695 * 179.97438 * 17 16 15 28 28 H 1.08007 * 120.03713 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7084 1.3463 0.0006 5 1 1.8897 2.3964 -1.2126 6 1 1.8897 2.3965 1.2125 7 6 2.0086 -1.2026 0.0005 8 1 3.0745 -1.2107 0.1743 9 7 1.3405 -2.3805 -0.2199 10 6 0.1252 -2.4920 -0.8426 11 6 -0.2472 -3.7815 -0.8920 12 6 0.8200 -4.5619 -0.2572 13 6 1.0116 -5.9224 -0.0140 14 6 2.1573 -6.3462 0.6231 15 6 3.1179 -5.4284 1.0230 16 6 4.3651 -5.9091 1.7193 17 8 5.3757 -6.1873 0.7480 18 6 2.9427 -4.0806 0.7896 19 6 1.7947 -3.6318 0.1480 20 1 -0.4849 0.8401 0.0004 21 1 -0.4494 -1.6654 -1.2335 22 1 -1.1582 -4.1706 -1.3221 23 1 0.2655 -6.6394 -0.3233 24 1 2.3086 -7.3987 0.8123 25 1 4.7201 -5.1374 2.4024 26 1 4.1411 -6.8161 2.2806 27 1 6.2085 -6.5015 1.1260 28 1 3.6970 -3.3748 1.1048 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020457276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = 3.863511 kcal Electronic energy + Delta-G solvation = -13849.023952 eV Core-core repulsion = 11444.179672 eV Total energy + Delta-G solvation = -2404.844280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00328 -37.21051 -35.46168 -33.18017 -31.07418 -28.88588 -28.66494 -24.93381 -24.50937 -21.47237 -19.90902 -19.67247 -17.51731 -17.10868 -15.65651 -15.13569 -14.71799 -14.61104 -13.80550 -13.37735 -12.94965 -12.78648 -12.61701 -11.87770 -11.78510 -11.40284 -11.15726 -10.79234 -10.63548 -10.51385 -10.34768 -9.87958 -9.70100 -9.21920 -8.55875 -7.09830 -6.87798 -6.56395 -4.29866 2.15036 2.58040 2.98099 3.02961 3.08594 3.80262 4.04155 4.61466 4.79745 4.91241 5.18976 5.50114 5.55788 5.82581 5.88009 5.98271 6.40089 6.43395 6.51271 6.90738 7.04137 7.08651 7.12441 7.20359 7.49477 7.56404 7.65702 7.89872 8.01075 8.18271 8.46362 8.99902 9.43118 10.27704 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.009236 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.504569 B = 3030.896928 C = 3784.353521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.290 5.290 10 C 0.087 3.913 11 C -0.285 4.285 12 C -0.112 4.112 13 C -0.087 4.087 14 C -0.151 4.151 15 C -0.119 4.119 16 C 0.129 3.871 17 O -0.569 6.569 18 C -0.080 4.080 19 C 0.048 3.952 20 H 0.279 0.721 21 H 0.171 0.829 22 H 0.124 0.876 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.368 0.632 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -5.143 2.046 7.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.123 0.877 9 N 0.047 4.953 10 C -0.048 4.048 11 C -0.309 4.309 12 C -0.119 4.119 13 C -0.106 4.106 14 C -0.171 4.171 15 C -0.121 4.121 16 C 0.052 3.948 17 O -0.373 6.373 18 C -0.101 4.101 19 C -0.063 4.063 20 H 0.089 0.911 21 H 0.188 0.812 22 H 0.142 0.858 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.214 0.786 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.033 -4.424 1.702 6.224 hybrid contribution 0.652 0.698 0.492 1.074 sum 4.685 -3.727 2.194 6.376 Atomic orbital electron populations 1.69903 1.06261 1.28723 1.43630 1.25500 0.95731 1.00520 0.94898 0.85658 0.79665 0.79831 0.78406 1.18796 1.19856 1.20059 1.19896 0.93928 0.82198 1.50678 0.87693 1.40229 1.14566 1.03373 1.37145 1.22105 0.88339 0.97054 0.97303 1.21298 1.01108 0.92496 1.16023 1.19080 0.95852 0.92470 1.04451 1.20213 0.97010 0.93518 0.99860 1.20319 0.95292 0.97513 1.03994 1.18827 0.95338 0.92589 1.05328 1.20877 0.86558 0.97899 0.89425 1.86660 1.25080 1.89083 1.36493 1.19693 0.95600 0.94379 1.00396 1.18307 0.97284 0.85976 1.04778 0.91072 0.81211 0.85789 0.87606 0.87808 0.93677 0.93617 0.78604 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.17 10.85 55.49 0.60 -21.57 15 2 C 0.04 1.05 5.35 -17.49 -0.09 0.95 15 3 Si 0.94 19.16 29.56 -169.99 -5.03 14.14 15 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 7 C -0.34 -9.05 9.93 -14.92 -0.15 -9.20 15 8 H 0.11 2.69 7.85 -52.49 -0.41 2.28 15 9 N -0.29 -7.87 2.92 -59.74 -0.17 -8.04 15 10 C 0.09 2.26 9.89 -16.63 -0.16 2.10 15 11 C -0.29 -6.87 11.09 -37.57 -0.42 -7.28 15 12 C -0.11 -2.74 6.37 -105.09 -0.67 -3.41 15 13 C -0.09 -1.85 10.10 -39.27 -0.40 -2.25 15 14 C -0.15 -3.00 9.67 -39.56 -0.38 -3.38 15 15 C -0.12 -2.42 5.51 -104.56 -0.58 -2.99 15 16 C 0.13 2.05 7.15 36.01 0.26 2.31 15 17 O -0.57 -8.93 13.64 -35.23 -0.48 -9.41 15 18 C -0.08 -1.86 9.58 -39.44 -0.38 -2.23 15 19 C 0.05 1.23 6.75 -83.85 -0.57 0.66 15 20 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 21 H 0.17 4.39 6.35 -52.49 -0.33 4.06 15 22 H 0.12 2.61 8.06 -52.49 -0.42 2.18 15 23 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.04 0.65 8.08 -51.93 -0.42 0.23 15 26 H 0.05 0.62 8.08 -51.93 -0.42 0.20 15 27 H 0.37 3.56 9.12 45.56 0.42 3.98 15 28 H 0.11 2.33 8.06 -52.48 -0.42 1.90 15 LS Contribution 249.70 15.07 3.76 3.76 Total: -1.00 -30.14 249.70 -6.84 -36.99 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -1.99 Total: 8.87 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.53 Total: -24.74 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.43 Total: -29.61 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.48 Total: -9.41 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.14 -6.84 -36.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020457276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.852 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds