Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86804 * 120.00324 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46727 * 299.99805 * 3 2 1 6 6 H 1.48501 * 109.47119 * 59.99728 * 3 2 1 7 7 C 1.38858 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00055 * 190.70634 * 7 2 1 9 9 N 1.37206 * 119.99997 * 10.71540 * 7 2 1 10 10 C 1.37008 * 125.08697 * 21.22641 * 9 7 2 11 11 C 1.34303 * 109.92675 * 180.17161 * 10 9 7 12 12 C 1.46665 * 107.05010 * 359.60591 * 11 10 9 13 13 C 1.39521 * 133.96518 * 180.26597 * 12 11 10 14 14 C 1.37777 * 119.65305 * 179.97438 * 13 12 11 15 15 C 1.38751 * 120.36419 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.67488 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47275 * 89.99480 * 16 15 14 18 18 C 1.37896 * 120.64732 * 359.97438 * 15 14 13 19 19 C 1.38108 * 125.09178 * 200.95435 * 9 7 2 20 20 H 0.97003 * 119.99417 * 359.97438 * 1 2 3 21 21 H 1.07993 * 125.04215 * 0.02562 * 10 9 7 22 22 H 1.08000 * 126.47642 * 179.86320 * 11 10 9 23 23 H 1.08002 * 120.17233 * 359.95140 * 13 12 11 24 24 H 1.07996 * 119.82025 * 180.02562 * 14 13 12 25 25 H 1.09003 * 109.46883 * 209.99915 * 16 15 14 26 26 H 1.08995 * 109.46926 * 329.99181 * 16 15 14 27 27 H 0.96703 * 113.99695 * 179.97438 * 17 16 15 28 28 H 1.08007 * 120.03713 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7084 1.3463 0.0006 5 1 1.8897 2.3964 -1.2126 6 1 1.8897 2.3965 1.2125 7 6 2.0086 -1.2026 0.0005 8 1 3.0745 -1.2107 0.1743 9 7 1.3405 -2.3805 -0.2199 10 6 0.1252 -2.4920 -0.8426 11 6 -0.2472 -3.7815 -0.8920 12 6 0.8200 -4.5619 -0.2572 13 6 1.0116 -5.9224 -0.0140 14 6 2.1573 -6.3462 0.6231 15 6 3.1179 -5.4284 1.0230 16 6 4.3651 -5.9091 1.7193 17 8 5.3757 -6.1873 0.7480 18 6 2.9427 -4.0806 0.7896 19 6 1.7947 -3.6318 0.1480 20 1 -0.4849 0.8401 0.0004 21 1 -0.4494 -1.6654 -1.2335 22 1 -1.1582 -4.1706 -1.3221 23 1 0.2655 -6.6394 -0.3233 24 1 2.3086 -7.3987 0.8123 25 1 4.7201 -5.1374 2.4024 26 1 4.1411 -6.8161 2.2806 27 1 6.2085 -6.5015 1.1260 28 1 3.6970 -3.3748 1.1048 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020457276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -15.593529 kcal Electronic energy + Delta-G solvation = -13849.867673 eV Core-core repulsion = 11444.179672 eV Total energy + Delta-G solvation = -2405.688000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.81400 -38.68472 -36.92283 -35.02838 -32.85328 -30.57738 -30.39678 -26.79640 -26.06043 -23.18951 -21.71902 -21.42158 -19.35185 -18.27505 -17.56163 -16.87107 -16.27143 -16.18986 -15.27633 -15.25031 -14.66992 -14.40661 -14.07771 -13.65555 -13.52458 -13.07515 -12.85471 -12.54029 -12.24977 -12.13221 -12.06675 -11.49993 -11.06007 -10.88563 -10.35632 -8.91029 -8.74909 -8.41200 -6.27609 0.41901 0.89669 1.33862 1.37193 1.50846 2.08083 2.18896 2.88690 2.98718 3.17687 3.81029 4.08107 4.22725 4.34447 4.38066 4.62489 4.69120 4.73951 4.80780 5.04471 5.23992 5.33126 5.33961 5.40083 5.73065 5.81106 5.87729 6.27496 6.40050 6.53931 7.03209 7.10035 7.52159 8.40444 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.009236 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.504569 B = 3030.896928 C = 3784.353521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.001 3.999 3 Si 1.014 2.986 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.313 5.313 10 C 0.057 3.943 11 C -0.284 4.284 12 C -0.140 4.140 13 C -0.089 4.089 14 C -0.147 4.147 15 C -0.110 4.110 16 C 0.131 3.869 17 O -0.589 6.589 18 C -0.112 4.112 19 C 0.014 3.986 20 H 0.285 0.715 21 H 0.161 0.839 22 H 0.150 0.850 23 H 0.138 0.862 24 H 0.146 0.854 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.396 0.604 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -6.638 2.717 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.119 0.881 9 N 0.023 4.977 10 C -0.077 4.077 11 C -0.308 4.308 12 C -0.146 4.146 13 C -0.107 4.107 14 C -0.167 4.167 15 C -0.112 4.112 16 C 0.055 3.945 17 O -0.398 6.398 18 C -0.132 4.132 19 C -0.096 4.096 20 H 0.095 0.905 21 H 0.178 0.822 22 H 0.168 0.832 23 H 0.155 0.845 24 H 0.163 0.837 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.246 0.754 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.167 -5.952 2.381 8.234 hybrid contribution 0.354 0.959 0.322 1.072 sum 5.521 -4.992 2.703 7.919 Atomic orbital electron populations 1.69992 1.07686 1.29946 1.43941 1.26514 0.96589 1.03590 0.93672 0.84597 0.78337 0.74950 0.78750 1.18294 1.18946 1.19247 1.20190 0.94204 0.83237 1.52619 0.88062 1.40431 1.15087 1.03967 1.38233 1.22152 0.88888 0.97714 0.98980 1.21639 1.01910 0.91923 1.15334 1.19481 0.95753 0.93961 1.05364 1.20645 0.98295 0.92571 0.99205 1.20850 0.94141 0.99479 1.02182 1.19471 0.97207 0.91464 1.03019 1.20886 0.84947 0.99745 0.88968 1.86563 1.26612 1.89434 1.37238 1.19934 0.95305 0.96003 1.01988 1.18923 0.98791 0.86058 1.05853 0.90481 0.82220 0.83199 0.84454 0.83673 0.92574 0.90152 0.75364 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.43 10.85 21.65 0.23 -47.19 15 2 C 0.00 0.06 5.35 84.90 0.45 0.51 15 3 Si 1.01 39.81 29.56 68.60 2.03 41.84 15 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 5 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 7 C -0.38 -20.94 9.93 84.00 0.83 -20.10 15 8 H 0.10 5.46 7.85 -2.91 -0.02 5.44 15 9 N -0.31 -17.74 2.92 -342.91 -1.00 -18.74 15 10 C 0.06 3.09 9.89 82.99 0.82 3.91 15 11 C -0.28 -13.92 11.09 23.57 0.26 -13.66 15 12 C -0.14 -6.84 6.37 -20.17 -0.13 -6.97 15 13 C -0.09 -3.56 10.10 22.47 0.23 -3.33 15 14 C -0.15 -5.33 9.67 22.28 0.22 -5.11 15 15 C -0.11 -4.22 5.51 -19.82 -0.11 -4.33 15 16 C 0.13 3.69 7.15 71.24 0.51 4.20 15 17 O -0.59 -16.45 13.64 -148.98 -2.03 -18.48 15 18 C -0.11 -5.21 9.58 22.36 0.21 -4.99 15 19 C 0.01 0.75 6.75 38.93 0.26 1.02 15 20 H 0.29 13.94 8.31 -92.71 -0.77 13.17 15 21 H 0.16 8.75 6.35 -2.91 -0.02 8.73 15 22 H 0.15 6.27 8.06 -2.91 -0.02 6.25 15 23 H 0.14 4.53 8.06 -2.91 -0.02 4.51 15 24 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.06 1.45 8.08 -2.39 -0.02 1.43 15 26 H 0.08 1.73 8.08 -2.39 -0.02 1.71 15 27 H 0.40 6.11 9.12 -74.06 -0.68 5.44 15 28 H 0.10 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -67.16 249.70 3.29 -63.86 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.50 Total: 27.56 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 3.56 Total: -48.85 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.77 Total: -65.93 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -2.03 Total: -18.48 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -67.16 3.29 -63.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020457276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.269 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds