Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86800 * 120.00305 * 2 1 4 4 H 1.48499 * 109.47158 * 270.00454 * 3 2 1 5 5 H 1.48502 * 109.46954 * 30.00010 * 3 2 1 6 6 H 1.48494 * 109.47250 * 150.00097 * 3 2 1 7 7 C 1.38854 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00786 * 190.69160 * 7 2 1 9 9 N 1.37209 * 119.99952 * 10.96892 * 7 2 1 10 10 C 1.37002 * 125.09018 * 20.82316 * 9 7 2 11 11 C 1.34305 * 109.93517 * 179.81715 * 10 9 7 12 12 C 1.46674 * 107.04457 * 0.42986 * 11 10 9 13 13 C 1.39514 * 133.96335 * 179.73111 * 12 11 10 14 14 C 1.37780 * 119.65167 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.81449 * 180.02562 * 14 13 12 16 16 O 1.42908 * 109.47076 * 89.99809 * 15 14 13 17 17 C 1.38750 * 120.36575 * 359.97438 * 14 13 12 18 18 C 1.37898 * 120.64653 * 0.02562 * 17 14 13 19 19 C 1.38112 * 125.09335 * 201.13016 * 9 7 2 20 20 H 0.97001 * 119.99854 * 359.97438 * 1 2 3 21 21 H 1.07999 * 125.03752 * 0.02562 * 10 9 7 22 22 H 1.07991 * 126.48046 * 180.17598 * 11 10 9 23 23 H 1.08001 * 120.17694 * 0.02570 * 13 12 11 24 24 H 1.08997 * 109.47007 * 209.99412 * 15 14 13 25 25 H 1.09002 * 109.47104 * 329.99464 * 15 14 13 26 26 H 0.96701 * 113.99450 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.67739 * 180.02562 * 17 14 13 28 28 H 1.08001 * 120.03986 * 180.02562 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6526 0.7001 6 1 3.5459 1.4401 0.7000 7 6 2.0086 -1.2025 0.0005 8 1 3.0746 -1.2107 0.1740 9 7 1.3414 -2.3800 -0.2250 10 6 0.1249 -2.4895 -0.8457 11 6 -0.2425 -3.7798 -0.9085 12 6 0.8203 -4.5613 -0.2674 13 6 1.0094 -5.9219 -0.0236 14 6 2.1504 -6.3466 0.6213 15 6 2.3587 -7.8155 0.8860 16 8 3.0490 -8.4052 -0.2177 17 6 3.1092 -5.4296 1.0275 18 6 2.9363 -4.0817 0.7936 19 6 1.7927 -3.6318 0.1449 20 1 -0.4850 0.8401 0.0004 21 1 -0.4515 -1.6614 -1.2307 22 1 -1.1510 -4.1682 -1.3446 23 1 0.2653 -6.6384 -0.3388 24 1 2.9499 -7.9410 1.7931 25 1 1.3918 -8.3027 1.0121 26 1 3.2179 -9.3519 -0.1154 27 1 3.9997 -5.7749 1.5318 28 1 3.6891 -3.3765 1.1136 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020494319.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = 3.641136 kcal Electronic energy + Delta-G solvation = -13777.019923 eV Core-core repulsion = 11372.166000 eV Total energy + Delta-G solvation = -2404.853923 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00260 -37.23007 -35.43893 -33.17066 -30.98709 -29.57368 -27.90485 -25.52002 -24.04978 -21.50299 -20.02800 -19.56547 -17.59552 -17.11124 -15.65593 -15.13896 -14.70617 -14.61520 -13.81735 -13.37633 -12.94654 -12.75957 -12.43212 -12.01797 -11.71820 -11.41039 -11.26807 -10.88474 -10.62249 -10.57323 -10.22253 -9.91135 -9.66943 -9.22861 -8.57179 -7.08933 -6.88045 -6.56852 -4.30231 2.18519 2.53988 2.99775 3.02941 3.06885 3.80337 4.06413 4.58347 4.84350 4.90518 5.17540 5.46915 5.52557 5.81092 5.89460 5.99568 6.40930 6.43594 6.51194 6.90800 7.05768 7.08538 7.14050 7.17271 7.47440 7.56793 7.65024 7.89495 8.00930 8.17388 8.46202 8.99663 9.42936 10.27772 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.055644 B = 0.007507 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.077445 B = 3729.125196 C = 4125.295547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.340 4.340 8 H 0.106 0.894 9 N -0.291 5.291 10 C 0.085 3.915 11 C -0.281 4.281 12 C -0.123 4.123 13 C -0.056 4.056 14 C -0.154 4.154 15 C 0.132 3.868 16 O -0.570 6.570 17 C -0.117 4.117 18 C -0.111 4.111 19 C 0.058 3.942 20 H 0.279 0.721 21 H 0.171 0.829 22 H 0.124 0.876 23 H 0.104 0.896 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.367 0.633 27 H 0.106 0.894 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -6.986 1.225 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.123 0.877 9 N 0.046 4.954 10 C -0.049 4.049 11 C -0.305 4.305 12 C -0.129 4.129 13 C -0.075 4.075 14 C -0.155 4.155 15 C 0.055 3.945 16 O -0.374 6.374 17 C -0.137 4.137 18 C -0.131 4.131 19 C -0.054 4.054 20 H 0.090 0.910 21 H 0.188 0.812 22 H 0.142 0.858 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.213 0.787 27 H 0.124 0.876 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.436 -5.837 1.064 6.414 hybrid contribution 0.274 0.320 0.324 0.532 sum 2.710 -5.517 1.388 6.302 Atomic orbital electron populations 1.69891 1.06260 1.28826 1.43567 1.25501 0.95737 1.00532 0.94881 0.85701 0.79287 0.79505 0.78967 1.19593 1.20250 1.18953 1.19855 0.93954 0.82214 1.50763 0.87677 1.40260 1.14540 1.03440 1.37143 1.22114 0.88360 0.97039 0.97433 1.21300 1.01167 0.92422 1.15605 1.19009 0.96294 0.92302 1.05258 1.20101 0.96435 0.93457 0.97518 1.18913 0.96913 0.92691 1.07007 1.20849 0.94617 0.91214 0.87848 1.86672 1.79839 1.26391 1.44539 1.20251 0.98290 0.91945 1.03192 1.19825 0.96322 0.94967 1.02028 1.18407 0.97266 0.85874 1.03862 0.91021 0.81174 0.85787 0.87767 0.93830 0.93838 0.78727 0.87562 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.17 10.84 55.49 0.60 -21.56 15 2 C 0.04 1.05 5.35 -17.49 -0.09 0.95 15 3 Si 0.94 19.14 29.56 -169.99 -5.03 14.12 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 7 C -0.34 -9.04 9.93 -14.92 -0.15 -9.19 15 8 H 0.11 2.66 7.85 -52.49 -0.41 2.25 15 9 N -0.29 -7.86 2.92 -59.73 -0.17 -8.04 15 10 C 0.08 2.20 9.89 -16.63 -0.16 2.03 15 11 C -0.28 -6.77 11.09 -37.57 -0.42 -7.18 15 12 C -0.12 -3.00 6.37 -105.09 -0.67 -3.67 15 13 C -0.06 -1.21 9.74 -39.27 -0.38 -1.59 15 14 C -0.15 -3.04 5.51 -104.60 -0.58 -3.62 15 15 C 0.13 2.01 7.16 36.01 0.26 2.27 15 16 O -0.57 -8.67 13.64 -35.23 -0.48 -9.15 15 17 C -0.12 -2.36 9.67 -39.52 -0.38 -2.74 15 18 C -0.11 -2.53 9.95 -39.44 -0.39 -2.92 15 19 C 0.06 1.49 6.75 -83.84 -0.57 0.92 15 20 H 0.28 6.69 8.31 -40.82 -0.34 6.35 15 21 H 0.17 4.40 6.33 -52.49 -0.33 4.06 15 22 H 0.12 2.61 8.06 -52.49 -0.42 2.19 15 23 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.04 0.58 8.08 -51.93 -0.42 0.16 15 25 H 0.04 0.59 8.08 -51.93 -0.42 0.17 15 26 H 0.37 3.39 9.12 45.56 0.42 3.80 15 27 H 0.11 1.84 8.06 -52.49 -0.42 1.41 15 28 H 0.11 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 249.70 15.07 3.76 3.76 Total: -1.00 -30.05 249.70 -6.84 -36.89 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.99 Total: 8.72 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.53 Total: -24.74 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.43 Total: -29.60 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.48 Total: -9.15 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.05 -6.84 -36.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020494319.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.533 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds