Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99619 * 2 1 4 4 C 1.50695 * 120.00548 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47123 * 94.99411 * 4 2 1 6 6 C 1.50703 * 109.47062 * 180.02562 * 5 4 2 7 7 C 1.37645 * 120.13007 * 265.30930 * 6 5 4 8 8 C 1.38605 * 120.24651 * 180.32018 * 7 6 5 9 9 C 1.38655 * 120.50572 * 359.67394 * 8 7 6 10 10 C 1.37601 * 120.24745 * 359.97438 * 9 8 7 11 11 C 1.40696 * 120.12867 * 85.00001 * 6 5 4 12 12 C 1.41400 * 120.24530 * 359.97438 * 11 6 5 13 13 H 1.08003 * 119.99719 * 25.87056 * 12 11 6 14 14 C 1.39942 * 120.00205 * 205.88123 * 12 11 6 15 15 N 1.30821 * 119.99968 * 16.29869 * 14 12 11 16 16 Si 1.86803 * 120.00009 * 196.30797 * 14 12 11 17 17 H 1.48504 * 109.47020 * 265.18035 * 16 14 12 18 18 H 1.48505 * 109.46937 * 25.18007 * 16 14 12 19 19 H 1.48498 * 109.47234 * 145.18150 * 16 14 12 20 20 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.99591 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46678 * 270.00382 * 3 2 1 23 23 H 1.08998 * 109.47218 * 30.00141 * 3 2 1 24 24 H 1.09000 * 109.47214 * 150.00336 * 3 2 1 25 25 H 1.09007 * 109.46807 * 334.99902 * 4 2 1 26 26 H 1.08997 * 109.47152 * 214.99681 * 4 2 1 27 27 H 1.09000 * 109.47093 * 60.00826 * 5 4 2 28 28 H 1.08997 * 109.47327 * 300.00163 * 5 4 2 29 29 H 1.07994 * 119.87429 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.74825 * 179.69146 * 8 7 6 31 31 H 1.07997 * 119.87993 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.12613 * 180.02562 * 10 9 8 33 33 H 0.97002 * 120.00001 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4377 6 6 3.1805 -2.9886 -1.4384 7 6 4.5569 -2.9921 -1.4319 8 6 5.2520 -4.1913 -1.4391 9 6 4.5715 -5.3993 -1.4462 10 6 3.1956 -5.4198 -1.4455 11 6 2.4793 -4.2084 -1.4390 12 6 1.0654 -4.2171 -1.4385 13 1 0.5200 -3.3786 -1.8458 14 6 0.3726 -5.3122 -0.9100 15 7 0.9928 -6.1690 -0.1402 16 14 -1.4378 -5.5507 -1.3040 17 1 -2.2625 -4.9536 -0.2229 18 1 -1.7554 -4.8859 -2.5935 19 1 -1.7346 -7.0019 -1.4090 20 1 -0.5401 0.9352 0.0004 21 1 -0.5399 -0.9353 0.0004 22 1 2.2450 1.6198 -1.0277 23 1 1.4743 2.0648 0.5138 24 1 3.0159 1.1749 0.5138 25 1 1.4387 -2.0856 0.4334 26 1 2.9743 -1.1989 0.5888 27 1 3.0523 -0.9027 -1.8717 28 1 1.5167 -1.7893 -2.0272 29 1 5.0972 -2.0571 -1.4260 30 1 6.3320 -4.1847 -1.4390 31 1 5.1232 -6.3276 -1.4514 32 1 2.6675 -6.3618 -1.4505 33 1 0.5127 -6.9282 0.2258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368556.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = 10.134909 kcal Electronic energy + Delta-G solvation = -14030.913719 eV Core-core repulsion = 11827.600393 eV Total energy + Delta-G solvation = -2203.313326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.87935 -35.88622 -33.59262 -31.82719 -29.45195 -27.82438 -26.86575 -25.18933 -22.91546 -20.89711 -19.35402 -17.84814 -17.11151 -15.42920 -14.62665 -14.44825 -14.16575 -13.59022 -13.34780 -13.08753 -12.57201 -11.97339 -11.91073 -11.74776 -11.47257 -11.27494 -11.05881 -10.88286 -10.65612 -10.50385 -10.29954 -10.03948 -9.37740 -9.21618 -9.10010 -8.57917 -7.31480 -7.26220 -6.70721 -4.30277 2.64900 2.82300 3.06267 3.08948 3.13236 3.26180 3.95877 4.68369 5.29745 5.36527 5.66623 5.80754 5.84817 6.01702 6.14865 6.19305 6.29649 6.40346 6.44459 6.53541 6.56304 6.69069 6.92269 7.04981 7.15836 7.18885 7.30817 7.37965 7.46486 7.68988 7.96613 8.08952 8.14098 8.35247 8.68035 8.94528 9.02709 10.23917 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.012865 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.967042 B = 2175.983865 C = 3503.240094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.078 4.078 5 C -0.040 4.040 6 C -0.193 4.193 7 C -0.092 4.092 8 C -0.241 4.241 9 C -0.110 4.110 10 C -0.163 4.163 11 C 0.117 3.883 12 C -0.459 4.459 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.797 5.797 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.276 1.276 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 6.707 0.000 6.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.117 4.117 3 C -0.174 4.174 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.195 4.195 7 C -0.110 4.110 8 C -0.261 4.261 9 C -0.128 4.128 10 C -0.182 4.182 11 C 0.115 3.885 12 C -0.489 4.489 13 H 0.098 0.902 14 C -0.141 4.141 15 N -0.423 5.423 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.202 1.202 20 H 0.106 0.894 21 H 0.117 0.883 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.817 6.495 0.147 6.548 hybrid contribution -0.778 -0.284 -0.022 0.829 sum -1.595 6.211 0.125 6.414 Atomic orbital electron populations 1.23623 0.95420 1.01321 1.04438 1.21972 0.95533 0.96138 0.98032 1.20858 1.00029 0.94828 1.01692 1.20685 0.99308 0.93178 0.98387 1.20049 0.98928 0.93947 0.94786 1.19671 0.92608 0.94108 1.13090 1.20385 0.93743 0.95862 1.01052 1.20346 0.96951 0.93032 1.15729 1.20676 0.94967 0.95774 1.01421 1.21313 0.92282 0.98798 1.05838 1.17437 0.93159 0.90166 0.87783 1.19548 0.91418 1.02814 1.35078 0.90239 1.25867 1.00500 0.94848 0.92838 1.69827 1.38341 1.11456 1.22631 0.86417 0.82623 0.78343 0.80085 1.19615 1.18455 1.20153 0.89446 0.88264 0.91764 0.92552 0.92075 0.90326 0.92396 0.94008 0.91972 0.89640 0.89776 0.89680 0.86601 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.31 13.89 29.01 0.40 -2.91 16 2 C -0.12 -1.90 5.31 -101.07 -0.54 -2.43 16 3 C -0.12 -1.55 10.03 36.01 0.36 -1.19 16 4 C -0.08 -1.50 5.36 -27.89 -0.15 -1.65 16 5 C -0.04 -0.82 4.85 -27.88 -0.14 -0.95 16 6 C -0.19 -4.62 5.19 -103.91 -0.54 -5.16 16 7 C -0.09 -2.10 9.66 -39.66 -0.38 -2.49 16 8 C -0.24 -5.55 10.05 -39.29 -0.39 -5.94 16 9 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 10 C -0.16 -4.29 8.68 -38.87 -0.34 -4.62 16 11 C 0.12 3.07 5.56 -106.82 -0.59 2.48 16 12 C -0.46 -11.87 8.29 -37.74 -0.31 -12.19 16 13 H 0.08 1.99 6.36 -52.48 -0.33 1.66 16 14 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 15 N -0.80 -20.60 10.98 55.55 0.61 -19.99 16 16 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H 0.09 1.17 8.04 -52.49 -0.42 0.75 16 21 H 0.10 1.66 7.99 -52.49 -0.42 1.24 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 24 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.08 1.70 7.82 -51.92 -0.41 1.29 16 26 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 27 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 28 H 0.06 1.32 6.48 -51.93 -0.34 0.98 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -26.69 279.76 -8.06 -34.75 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.75 Total: 5.63 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: -3.11 Total: -38.29 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.61 Total: -19.99 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.69 -8.06 -34.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368556.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.886 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds