Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99619 * 2 1 4 4 C 1.50695 * 120.00548 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47123 * 94.99411 * 4 2 1 6 6 C 1.50703 * 109.47062 * 180.02562 * 5 4 2 7 7 C 1.37645 * 120.13007 * 265.30930 * 6 5 4 8 8 C 1.38605 * 120.24651 * 180.32018 * 7 6 5 9 9 C 1.38655 * 120.50572 * 359.67394 * 8 7 6 10 10 C 1.37601 * 120.24745 * 359.97438 * 9 8 7 11 11 C 1.40696 * 120.12867 * 85.00001 * 6 5 4 12 12 C 1.41400 * 120.24530 * 359.97438 * 11 6 5 13 13 H 1.08003 * 119.99719 * 25.87056 * 12 11 6 14 14 C 1.39942 * 120.00205 * 205.88123 * 12 11 6 15 15 N 1.30821 * 119.99968 * 16.29869 * 14 12 11 16 16 Si 1.86803 * 120.00009 * 196.30797 * 14 12 11 17 17 H 1.48504 * 109.47020 * 265.18035 * 16 14 12 18 18 H 1.48505 * 109.46937 * 25.18007 * 16 14 12 19 19 H 1.48498 * 109.47234 * 145.18150 * 16 14 12 20 20 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.99591 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46678 * 270.00382 * 3 2 1 23 23 H 1.08998 * 109.47218 * 30.00141 * 3 2 1 24 24 H 1.09000 * 109.47214 * 150.00336 * 3 2 1 25 25 H 1.09007 * 109.46807 * 334.99902 * 4 2 1 26 26 H 1.08997 * 109.47152 * 214.99681 * 4 2 1 27 27 H 1.09000 * 109.47093 * 60.00826 * 5 4 2 28 28 H 1.08997 * 109.47327 * 300.00163 * 5 4 2 29 29 H 1.07994 * 119.87429 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.74825 * 179.69146 * 8 7 6 31 31 H 1.07997 * 119.87993 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.12613 * 180.02562 * 10 9 8 33 33 H 0.97002 * 120.00001 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4377 6 6 3.1805 -2.9886 -1.4384 7 6 4.5569 -2.9921 -1.4319 8 6 5.2520 -4.1913 -1.4391 9 6 4.5715 -5.3993 -1.4462 10 6 3.1956 -5.4198 -1.4455 11 6 2.4793 -4.2084 -1.4390 12 6 1.0654 -4.2171 -1.4385 13 1 0.5200 -3.3786 -1.8458 14 6 0.3726 -5.3122 -0.9100 15 7 0.9928 -6.1690 -0.1402 16 14 -1.4378 -5.5507 -1.3040 17 1 -2.2625 -4.9536 -0.2229 18 1 -1.7554 -4.8859 -2.5935 19 1 -1.7346 -7.0019 -1.4090 20 1 -0.5401 0.9352 0.0004 21 1 -0.5399 -0.9353 0.0004 22 1 2.2450 1.6198 -1.0277 23 1 1.4743 2.0648 0.5138 24 1 3.0159 1.1749 0.5138 25 1 1.4387 -2.0856 0.4334 26 1 2.9743 -1.1989 0.5888 27 1 3.0523 -0.9027 -1.8717 28 1 1.5167 -1.7893 -2.0272 29 1 5.0972 -2.0571 -1.4260 30 1 6.3320 -4.1847 -1.4390 31 1 5.1232 -6.3276 -1.4514 32 1 2.6675 -6.3618 -1.4505 33 1 0.5127 -6.9282 0.2258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368556.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -1.279637 kcal Electronic energy + Delta-G solvation = -14031.408691 eV Core-core repulsion = 11827.600393 eV Total energy + Delta-G solvation = -2203.808298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.69143 -37.29179 -35.48478 -33.47204 -31.35144 -29.47213 -28.00985 -27.07576 -24.56351 -22.79601 -21.17203 -19.14295 -19.02137 -17.27372 -16.31710 -16.01452 -15.70140 -15.29319 -14.85379 -14.38215 -14.32134 -13.66857 -13.49654 -13.28659 -13.11703 -12.79494 -12.66951 -12.43347 -12.38225 -12.20077 -11.85406 -11.68289 -11.18830 -11.03285 -10.93426 -9.87469 -9.23896 -9.12014 -8.58461 -6.26547 0.99738 1.12548 1.36712 1.45284 1.47957 1.53331 2.20801 2.79123 3.74093 4.03141 4.11398 4.40420 4.53432 4.56889 4.72118 4.75941 4.76322 4.90064 4.95361 5.02499 5.08597 5.16689 5.17745 5.34511 5.40138 5.46880 5.58206 5.78975 5.84283 6.07159 6.13331 6.19255 6.22675 6.45611 6.75813 7.01178 7.11141 8.38389 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.012865 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.967042 B = 2175.983865 C = 3503.240094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.070 4.070 5 C -0.033 4.033 6 C -0.202 4.202 7 C -0.099 4.099 8 C -0.240 4.240 9 C -0.119 4.119 10 C -0.193 4.193 11 C 0.085 3.915 12 C -0.483 4.483 13 H 0.077 0.923 14 C 0.035 3.965 15 N -0.830 5.830 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.258 1.258 19 H -0.269 1.269 20 H 0.117 0.883 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 8.546 -0.154 8.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.126 4.126 3 C -0.169 4.169 4 C -0.108 4.108 5 C -0.071 4.071 6 C -0.203 4.203 7 C -0.117 4.117 8 C -0.259 4.259 9 C -0.137 4.137 10 C -0.213 4.213 11 C 0.083 3.917 12 C -0.513 4.513 13 H 0.095 0.905 14 C -0.179 4.179 15 N -0.457 5.457 16 Si 0.791 3.209 17 H -0.189 1.189 18 H -0.182 1.182 19 H -0.193 1.193 20 H 0.135 0.865 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.622 8.339 -0.007 8.362 hybrid contribution -0.728 -0.845 0.037 1.116 sum -1.350 7.493 0.030 7.614 Atomic orbital electron populations 1.23755 0.95450 1.01809 1.03626 1.22007 0.95750 0.96089 0.98752 1.20863 1.00082 0.93245 1.02728 1.20513 0.99098 0.94014 0.97156 1.20013 0.98336 0.93079 0.95645 1.20109 0.93628 0.94701 1.11892 1.20786 0.93484 0.97341 1.00048 1.20756 0.98637 0.92526 1.14015 1.20952 0.94327 0.97468 1.00968 1.21313 0.93473 0.98278 1.08244 1.17812 0.93879 0.91233 0.88796 1.19709 0.91794 1.03609 1.36191 0.90487 1.26661 1.04810 0.94223 0.92193 1.69893 1.40208 1.12112 1.23489 0.85379 0.77166 0.78507 0.79869 1.18884 1.18206 1.19340 0.86495 0.90283 0.90726 0.90513 0.91635 0.93936 0.92201 0.91604 0.93337 0.86405 0.86650 0.87723 0.88552 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.27 13.89 67.78 0.94 -5.33 16 2 C -0.13 -3.88 5.31 -16.49 -0.09 -3.97 16 3 C -0.11 -2.61 10.03 71.24 0.71 -1.89 16 4 C -0.07 -2.68 5.36 29.84 0.16 -2.52 16 5 C -0.03 -1.36 4.85 29.85 0.14 -1.21 16 6 C -0.20 -9.64 5.19 -19.40 -0.10 -9.74 16 7 C -0.10 -4.32 9.66 22.22 0.21 -4.11 16 8 C -0.24 -10.60 10.05 22.46 0.23 -10.38 16 9 C -0.12 -5.71 10.02 22.22 0.22 -5.49 16 10 C -0.19 -10.50 8.68 22.73 0.20 -10.30 16 11 C 0.08 4.59 5.56 -21.29 -0.12 4.47 16 12 C -0.48 -25.91 8.29 23.46 0.19 -25.72 16 13 H 0.08 4.01 6.36 -2.91 -0.02 3.99 16 14 C 0.03 1.79 5.16 85.26 0.44 2.23 16 15 N -0.83 -44.47 10.98 21.83 0.24 -44.23 16 16 Si 0.97 39.14 29.59 68.60 2.03 41.17 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 H 0.12 2.79 8.04 -2.91 -0.02 2.77 16 21 H 0.08 2.66 7.99 -2.91 -0.02 2.64 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 24 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 25 H 0.04 1.90 7.82 -2.38 -0.02 1.88 16 26 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 27 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.05 2.08 6.48 -2.39 -0.02 2.06 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 31 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 33 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 Total: -1.00 -58.36 279.76 6.49 -51.88 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 1.07 Total: 25.15 kcal Atomic # 6 Polarization: -77.11 SS G_CDS: 3.15 Total: -73.96 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.23 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -58.36 6.49 -51.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368556.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.597 kcal (2) G-P(sol) polarization free energy of solvation -58.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds