Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47264 * 300.00011 * 3 2 1 6 6 H 1.48502 * 109.47331 * 59.99874 * 3 2 1 7 7 C 1.38758 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 180.02562 * 7 2 1 9 9 N 1.36818 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.39436 * 120.00477 * 180.02562 * 9 7 2 11 11 C 1.39036 * 120.05778 * 359.97438 * 10 9 7 12 12 C 1.38221 * 119.93075 * 180.02562 * 11 10 9 13 13 F 1.35106 * 119.96999 * 179.97438 * 12 11 10 14 14 C 1.38754 * 120.06728 * 359.74358 * 12 11 10 15 15 F 1.35097 * 119.94098 * 180.27268 * 14 12 11 16 16 C 1.38458 * 120.12729 * 0.51745 * 14 12 11 17 17 C 1.38269 * 120.06141 * 359.48063 * 16 14 12 18 18 F 1.35100 * 120.03234 * 180.28057 * 17 16 14 19 19 H 0.97008 * 120.00058 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99818 * 359.97438 * 9 7 2 21 21 H 1.07997 * 120.03216 * 0.02562 * 11 10 9 22 22 H 1.08002 * 119.97316 * 179.76727 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0099 -1.2017 0.0005 8 1 3.0899 -1.2018 0.0010 9 7 1.3259 -2.3866 0.0005 10 6 2.0230 -3.5942 0.0016 11 6 3.4133 -3.5957 0.0022 12 6 4.1017 -4.7943 0.0027 13 9 5.4528 -4.7966 0.0027 14 6 3.4066 -5.9951 0.0081 15 9 4.0821 -7.1651 0.0141 16 6 2.0221 -5.9967 0.0021 17 6 1.3281 -4.8008 0.0016 18 9 -0.0229 -4.8031 0.0015 19 1 -0.4850 0.8401 -0.0004 20 1 0.3559 -2.3866 0.0005 21 1 3.9549 -2.6613 0.0022 22 1 1.4836 -6.9329 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061094134.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = -128.424486 kcal Electronic energy + Delta-G solvation = -13957.520130 eV Core-core repulsion = 10869.249577 eV Total energy + Delta-G solvation = -3088.270553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.22363 -49.66304 -49.25840 -39.83224 -36.85473 -33.89080 -31.18862 -29.58817 -26.77807 -24.04936 -23.05082 -20.19500 -19.22550 -18.74542 -17.98728 -17.19708 -17.18008 -16.49413 -16.28009 -15.91201 -15.72779 -15.60820 -15.16288 -14.95240 -14.06223 -13.88115 -13.69118 -12.94720 -12.84484 -12.58025 -12.15449 -11.98830 -11.77378 -10.71688 -9.75849 -8.71301 -8.65488 -5.88875 0.10673 0.28237 1.42877 1.45092 1.56526 2.18118 2.40454 2.89854 3.07048 3.18272 3.37050 3.70777 3.78123 4.32262 4.65758 4.90244 4.99598 5.06953 5.20470 5.33842 5.60095 6.04453 6.60687 7.15703 7.31505 8.50908 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.038078 B = 0.009101 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.153434 B = 3075.863086 C = 3801.170367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.004 2.996 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.325 4.325 8 H 0.118 0.882 9 N -0.548 5.548 10 C 0.179 3.821 11 C -0.226 4.226 12 C 0.127 3.873 13 F -0.138 7.138 14 C -0.054 4.054 15 F -0.145 7.145 16 C -0.077 4.077 17 C -0.026 4.026 18 F -0.149 7.149 19 H 0.282 0.718 20 H 0.400 0.600 21 H 0.146 0.854 22 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -4.679 -0.001 6.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.221 4.221 3 Si 0.827 3.173 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.455 4.455 8 H 0.135 0.865 9 N -0.147 5.147 10 C 0.054 3.946 11 C -0.252 4.252 12 C 0.105 3.895 13 F -0.116 7.116 14 C -0.078 4.078 15 F -0.124 7.124 16 C -0.097 4.097 17 C -0.052 4.052 18 F -0.128 7.128 19 H 0.092 0.908 20 H 0.235 0.765 21 H 0.163 0.837 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.853 -4.206 -0.001 5.705 hybrid contribution -0.264 0.600 -0.001 0.656 sum 3.589 -3.606 -0.002 5.088 Atomic orbital electron populations 1.69805 1.07630 1.30104 1.47399 1.26348 0.96532 1.03446 0.95782 0.84674 0.78756 0.75901 0.78001 1.17657 1.20133 1.20144 1.20244 0.93997 0.82802 1.48416 0.86457 1.41106 1.08447 1.02352 1.62815 1.17720 0.91677 0.85526 0.99654 1.20002 0.91804 0.97126 1.16262 1.17309 0.76426 0.93097 1.02634 1.91443 1.28852 1.97401 1.93953 1.16570 0.89591 0.79787 1.21856 1.91397 1.80034 1.45317 1.95686 1.20500 0.91598 0.98005 0.99613 1.16633 0.76605 0.92526 1.19391 1.91383 1.28870 1.97213 1.95351 0.90797 0.76472 0.83668 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.72 13.05 21.64 0.28 -46.44 14 2 C -0.02 -0.93 5.50 84.85 0.47 -0.46 14 3 Si 1.00 37.65 29.55 68.60 2.03 39.68 14 4 H -0.25 -8.93 7.11 99.48 0.71 -8.23 14 5 H -0.28 -10.24 7.11 99.48 0.71 -9.53 14 6 H -0.28 -10.24 7.11 99.48 0.71 -9.54 14 7 C -0.33 -15.66 9.55 84.04 0.80 -14.86 14 8 H 0.12 5.28 5.68 -2.91 -0.02 5.27 14 9 N -0.55 -25.99 5.44 -184.14 -1.00 -26.99 14 10 C 0.18 7.61 6.63 38.37 0.25 7.86 14 11 C -0.23 -9.01 9.28 22.46 0.21 -8.80 14 12 C 0.13 4.75 7.30 22.39 0.16 4.91 14 13 F -0.14 -5.03 17.18 44.97 0.77 -4.26 14 14 C -0.05 -1.92 7.31 22.45 0.16 -1.75 14 15 F -0.15 -5.04 17.18 44.97 0.77 -4.27 14 16 C -0.08 -2.59 9.99 22.33 0.22 -2.37 14 17 C -0.03 -1.01 7.31 22.52 0.16 -0.85 14 18 F -0.15 -5.90 16.64 44.97 0.75 -5.15 14 19 H 0.28 13.51 8.31 -92.70 -0.77 12.74 14 20 H 0.40 19.87 7.37 -92.71 -0.68 19.19 14 21 H 0.15 5.69 5.96 -2.91 -0.02 5.67 14 22 H 0.17 4.58 8.06 -2.91 -0.02 4.55 14 Total: -1.00 -50.27 218.60 6.66 -43.61 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.61 Total: 20.13 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 2.45 Total: -16.31 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -0.72 Total: -73.43 kcal Atomic # 9 Polarization: -15.98 SS G_CDS: 2.29 Total: -13.68 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -50.27 6.66 -43.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061094134.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.812 kcal (2) G-P(sol) polarization free energy of solvation -50.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds