Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86796 * 119.99835 * 2 1 4 4 H 1.48507 * 109.47157 * 274.98076 * 3 2 1 5 5 H 1.48502 * 109.47349 * 34.97636 * 3 2 1 6 6 H 1.48495 * 109.47434 * 154.97767 * 3 2 1 7 7 C 1.39942 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 186.00754 * 7 2 1 9 9 C 1.41798 * 120.00114 * 6.01629 * 7 2 1 10 10 N 1.31915 * 126.44630 * 354.35012 * 9 7 2 11 11 O 1.21275 * 110.08648 * 179.97438 * 10 9 7 12 12 C 1.34301 * 110.10042 * 0.02562 * 11 10 9 13 13 C 1.48013 * 126.41612 * 179.97438 * 12 11 10 14 14 C 1.39417 * 119.73186 * 359.75012 * 13 12 11 15 15 C 1.38480 * 119.05240 * 179.75418 * 14 13 12 16 16 C 1.38715 * 118.50781 * 0.50653 * 15 14 13 17 17 C 1.38422 * 119.37454 * 359.73489 * 16 15 14 18 18 N 1.31618 * 120.90716 * 0.02562 * 17 16 15 19 19 N 1.31638 * 107.16605 * 359.97438 * 12 11 10 20 20 H 0.96991 * 120.00286 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.47411 * 359.97438 * 14 13 12 22 22 H 1.08001 * 120.74460 * 180.23595 * 15 14 13 23 23 H 1.08001 * 120.31050 * 179.70601 * 16 15 14 24 24 H 1.08001 * 119.54637 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4122 0.5922 7 6 2.0073 -1.2119 0.0005 8 1 3.0829 -1.2144 0.0984 9 6 1.3043 -2.4366 -0.1276 10 7 -0.0058 -2.5895 -0.1501 11 8 -0.2861 -3.7632 -0.2714 12 6 0.8342 -4.5006 -0.3401 13 6 0.9104 -5.9712 -0.4891 14 6 -0.2630 -6.7201 -0.5662 15 6 -0.1753 -8.0946 -0.7106 16 6 1.0831 -8.6759 -0.7624 17 6 2.2065 -7.8720 -0.6746 18 7 2.0955 -6.5672 -0.5425 19 7 1.8519 -3.6704 -0.2503 20 1 -0.4850 0.8399 -0.0004 21 1 -1.2266 -6.2349 -0.5177 22 1 -1.0667 -8.7007 -0.7770 23 1 1.1853 -9.7457 -0.8697 24 1 3.1876 -8.3216 -0.7150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071499744.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = 97.741637 kcal Electronic energy + Delta-G solvation = -13358.987246 eV Core-core repulsion = 10854.673484 eV Total energy + Delta-G solvation = -2504.313762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.30152 -39.83407 -34.50808 -33.32079 -32.29702 -31.94212 -29.32810 -26.56263 -24.14937 -23.42847 -21.61103 -20.92429 -18.10385 -16.47560 -16.22817 -16.00733 -15.74334 -15.30611 -14.55709 -13.73956 -13.64847 -13.13400 -12.91531 -11.87135 -11.40568 -11.34167 -10.94416 -10.46735 -10.39416 -10.15149 -9.94026 -9.65938 -9.30977 -9.12530 -8.91129 -7.93765 -6.65583 -4.66222 0.90466 1.37593 2.87228 3.04884 3.12283 3.18180 3.67843 3.93157 3.98461 4.21088 4.69948 4.86163 5.03063 5.11903 5.29865 5.40179 5.64123 5.84414 6.07080 6.20291 6.50658 6.61136 6.89848 7.24307 7.66138 8.12635 8.29584 8.46903 8.82513 10.23735 10.37574 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.080910 B = 0.006644 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.979012 B = 4213.338228 C = 4546.493051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.069 3.931 3 Si 0.926 3.074 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.432 4.432 8 H 0.095 0.905 9 C 0.287 3.713 10 N -0.413 5.413 11 O 0.031 5.969 12 C 0.144 3.856 13 C 0.231 3.769 14 C -0.147 4.147 15 C -0.075 4.075 16 C -0.177 4.177 17 C 0.104 3.896 18 N -0.449 5.449 19 N -0.470 5.470 20 H 0.279 0.721 21 H 0.145 0.855 22 H 0.138 0.862 23 H 0.135 0.865 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -12.434 -1.362 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.113 0.887 9 C 0.035 3.965 10 N -0.138 5.138 11 O -0.013 6.013 12 C -0.076 4.076 13 C 0.093 3.907 14 C -0.169 4.169 15 C -0.101 4.101 16 C -0.198 4.198 17 C -0.055 4.055 18 N -0.160 5.160 19 N -0.212 5.212 20 H 0.089 0.911 21 H 0.163 0.837 22 H 0.156 0.844 23 H 0.153 0.847 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.245 -11.072 -1.221 11.142 hybrid contribution -0.441 0.112 -0.091 0.464 sum -0.687 -10.960 -1.312 11.060 Atomic orbital electron populations 1.69871 1.07227 1.28863 1.34268 1.25863 0.94999 1.01244 0.93069 0.86003 0.80158 0.79840 0.78954 1.19490 1.20191 1.18405 1.18469 0.94814 0.86180 1.47800 0.88737 1.22369 0.85774 0.91950 0.96366 1.75571 1.16338 0.90198 1.31683 1.85342 1.33735 1.14358 1.67852 1.25418 0.84288 0.93292 1.04552 1.17866 0.89085 0.87404 0.96337 1.22146 0.99570 0.94581 1.00554 1.21485 0.98154 0.94243 0.96241 1.22240 0.93637 1.01402 1.02506 1.22784 0.99103 0.88371 0.95289 1.67513 1.26476 1.11653 1.10309 1.72305 1.28579 1.00527 1.19799 0.91079 0.83741 0.84424 0.84711 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.00 12.00 55.54 0.67 -21.33 14 2 C 0.07 1.89 5.49 -17.37 -0.10 1.79 14 3 Si 0.93 19.86 29.56 -169.99 -5.03 14.84 14 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 14 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 14 6 H -0.26 -5.45 7.11 56.52 0.40 -5.04 14 7 C -0.43 -12.59 9.51 -37.58 -0.36 -12.95 14 8 H 0.09 2.63 7.85 -52.48 -0.41 2.22 14 9 C 0.29 8.62 7.67 -157.68 -1.21 7.41 14 10 N -0.41 -12.27 10.48 30.28 0.32 -11.96 14 11 O 0.03 0.82 11.07 16.38 0.18 1.00 14 12 C 0.14 3.56 8.08 -13.78 -0.11 3.45 14 13 C 0.23 4.51 6.75 -83.02 -0.56 3.95 14 14 C -0.15 -2.19 9.77 -39.05 -0.38 -2.57 14 15 C -0.08 -0.84 10.17 -39.32 -0.40 -1.24 14 16 C -0.18 -1.87 10.11 -39.34 -0.40 -2.27 14 17 C 0.10 1.38 11.18 -17.58 -0.20 1.18 14 18 N -0.45 -8.38 10.28 -9.82 -0.10 -8.48 14 19 N -0.47 -13.19 11.59 -11.39 -0.13 -13.32 14 20 H 0.28 7.14 8.29 -40.82 -0.34 6.80 14 21 H 0.14 1.98 7.93 -52.49 -0.42 1.56 14 22 H 0.14 1.05 8.06 -52.49 -0.42 0.63 14 23 H 0.13 0.93 8.06 -52.49 -0.42 0.50 14 24 H 0.16 1.57 8.06 -52.49 -0.42 1.15 14 LS Contribution 233.27 15.07 3.52 3.52 Total: -1.00 -34.26 233.27 -5.52 -39.78 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -1.23 Total: -2.79 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.71 Total: -1.26 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.75 Total: -55.09 kcal Atomic # 8 Polarization: 0.82 SS G_CDS: 0.18 Total: 1.00 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -34.26 -5.52 -39.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071499744.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.523 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds