Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86796 * 119.99835 * 2 1 4 4 H 1.48507 * 109.47157 * 274.98076 * 3 2 1 5 5 H 1.48502 * 109.47349 * 34.97636 * 3 2 1 6 6 H 1.48495 * 109.47434 * 154.97767 * 3 2 1 7 7 C 1.39942 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 186.00754 * 7 2 1 9 9 C 1.41798 * 120.00114 * 6.01629 * 7 2 1 10 10 N 1.31915 * 126.44630 * 354.35012 * 9 7 2 11 11 O 1.21275 * 110.08648 * 179.97438 * 10 9 7 12 12 C 1.34301 * 110.10042 * 0.02562 * 11 10 9 13 13 C 1.48013 * 126.41612 * 179.97438 * 12 11 10 14 14 C 1.39417 * 119.73186 * 359.75012 * 13 12 11 15 15 C 1.38480 * 119.05240 * 179.75418 * 14 13 12 16 16 C 1.38715 * 118.50781 * 0.50653 * 15 14 13 17 17 C 1.38422 * 119.37454 * 359.73489 * 16 15 14 18 18 N 1.31618 * 120.90716 * 0.02562 * 17 16 15 19 19 N 1.31638 * 107.16605 * 359.97438 * 12 11 10 20 20 H 0.96991 * 120.00286 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.47411 * 359.97438 * 14 13 12 22 22 H 1.08001 * 120.74460 * 180.23595 * 15 14 13 23 23 H 1.08001 * 120.31050 * 179.70601 * 16 15 14 24 24 H 1.08001 * 119.54637 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4122 0.5922 7 6 2.0073 -1.2119 0.0005 8 1 3.0829 -1.2144 0.0984 9 6 1.3043 -2.4366 -0.1276 10 7 -0.0058 -2.5895 -0.1501 11 8 -0.2861 -3.7632 -0.2714 12 6 0.8342 -4.5006 -0.3401 13 6 0.9104 -5.9712 -0.4891 14 6 -0.2630 -6.7201 -0.5662 15 6 -0.1753 -8.0946 -0.7106 16 6 1.0831 -8.6759 -0.7624 17 6 2.2065 -7.8720 -0.6746 18 7 2.0955 -6.5672 -0.5425 19 7 1.8519 -3.6704 -0.2503 20 1 -0.4850 0.8399 -0.0004 21 1 -1.2266 -6.2349 -0.5177 22 1 -1.0667 -8.7007 -0.7770 23 1 1.1853 -9.7457 -0.8697 24 1 3.1876 -8.3216 -0.7150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071499744.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = 70.898777 kcal Electronic energy + Delta-G solvation = -13360.151240 eV Core-core repulsion = 10854.673484 eV Total energy + Delta-G solvation = -2505.477756 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.37250 -40.98633 -36.58144 -35.24397 -33.62184 -33.37559 -31.02875 -28.70201 -25.60841 -24.68901 -23.50247 -22.67309 -19.83005 -18.30426 -18.16502 -17.46799 -17.18633 -16.61223 -16.35651 -15.14286 -14.98780 -14.77653 -13.98893 -13.35102 -13.25657 -13.07387 -12.77764 -12.40251 -12.34894 -11.96602 -11.55381 -11.26728 -10.89785 -10.65481 -10.44928 -9.66797 -8.69873 -6.86244 -0.37683 0.35286 1.11093 1.36119 1.37140 1.55015 2.00188 2.07668 2.18564 2.89275 3.15431 3.33728 3.74732 4.04721 4.11516 4.23998 4.40140 4.42733 4.78711 4.89013 5.14736 5.18763 5.23438 5.62200 5.73050 6.11432 6.34428 6.69175 6.97266 8.20212 8.35236 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.080910 B = 0.006644 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.979012 B = 4213.338228 C = 4546.493051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.022 3.978 3 Si 1.014 2.986 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.094 0.906 9 C 0.259 3.741 10 N -0.453 5.453 11 O 0.027 5.973 12 C 0.169 3.831 13 C 0.173 3.827 14 C -0.139 4.139 15 C -0.065 4.065 16 C -0.139 4.139 17 C 0.092 3.908 18 N -0.493 5.493 19 N -0.515 5.515 20 H 0.289 0.711 21 H 0.149 0.851 22 H 0.187 0.813 23 H 0.190 0.810 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -14.720 -1.723 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.195 4.195 3 Si 0.832 3.168 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.176 1.176 7 C -0.509 4.509 8 H 0.112 0.888 9 C 0.008 3.992 10 N -0.181 5.181 11 O -0.015 6.015 12 C -0.052 4.052 13 C 0.037 3.963 14 C -0.161 4.161 15 C -0.090 4.090 16 C -0.159 4.159 17 C -0.068 4.068 18 N -0.205 5.205 19 N -0.255 5.255 20 H 0.099 0.901 21 H 0.167 0.833 22 H 0.204 0.796 23 H 0.207 0.793 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.239 -13.395 -1.583 13.490 hybrid contribution -0.464 0.436 -0.008 0.636 sum -0.702 -12.959 -1.592 13.075 Atomic orbital electron populations 1.69964 1.09177 1.30672 1.34123 1.27057 0.95956 1.05061 0.91465 0.84735 0.78628 0.73840 0.79594 1.18359 1.18505 1.17620 1.18896 0.95146 0.87344 1.49509 0.88773 1.22856 0.86417 0.93113 0.96863 1.75488 1.16525 0.91841 1.34290 1.85223 1.34024 1.13745 1.68478 1.26467 0.82863 0.95601 1.00223 1.17786 0.91418 0.84847 1.02252 1.22326 0.98038 0.96379 0.99346 1.22064 1.00497 0.92460 0.93989 1.22860 0.92079 1.03658 0.97297 1.23468 1.01918 0.86724 0.94659 1.67306 1.26839 1.14664 1.11682 1.72268 1.29927 1.00532 1.22796 0.90070 0.83285 0.79550 0.79294 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.59 12.00 21.82 0.26 -47.33 14 2 C 0.02 1.23 5.49 85.27 0.47 1.70 14 3 Si 1.01 41.20 29.56 68.60 2.03 43.23 14 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 14 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 14 7 C -0.47 -28.71 9.51 23.56 0.22 -28.49 14 8 H 0.09 5.52 7.85 -2.91 -0.02 5.50 14 9 C 0.26 16.52 7.67 135.02 1.03 17.56 14 10 N -0.45 -28.58 10.48 -59.83 -0.63 -29.21 14 11 O 0.03 1.50 11.07 68.70 0.76 2.26 14 12 C 0.17 8.77 8.08 87.37 0.71 9.48 14 13 C 0.17 6.85 6.75 41.88 0.28 7.13 14 14 C -0.14 -3.92 9.77 22.61 0.22 -3.69 14 15 C -0.06 -1.12 10.17 22.44 0.23 -0.90 14 16 C -0.14 -2.14 10.11 22.43 0.23 -1.91 14 17 C 0.09 2.15 11.18 84.77 0.95 3.10 14 18 N -0.49 -18.33 10.28 -185.00 -1.90 -20.23 14 19 N -0.51 -30.69 11.59 -305.36 -3.54 -34.23 14 20 H 0.29 15.10 8.29 -92.72 -0.77 14.33 14 21 H 0.15 3.94 7.93 -2.91 -0.02 3.92 14 22 H 0.19 1.51 8.06 -2.91 -0.02 1.49 14 23 H 0.19 1.01 8.06 -2.91 -0.02 0.98 14 24 H 0.19 3.05 8.06 -2.91 -0.02 3.03 14 Total: -1.00 -82.44 233.27 2.56 -79.89 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.24 Total: 1.64 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.34 Total: 3.98 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -5.81 Total: -130.99 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.76 Total: 2.26 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -82.44 2.56 -79.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071499744.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.786 kcal (2) G-P(sol) polarization free energy of solvation -82.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds