Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86808 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99876 * 3 2 1 5 5 H 1.48497 * 109.46988 * 29.99972 * 3 2 1 6 6 H 1.48503 * 109.46911 * 149.99679 * 3 2 1 7 7 C 1.39944 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.41780 * 119.99720 * 0.02562 * 7 2 1 10 10 N 1.31916 * 126.45056 * 0.02562 * 9 7 2 11 11 O 1.21272 * 110.11205 * 179.67830 * 10 9 7 12 12 C 1.34319 * 110.10454 * 0.47426 * 11 10 9 13 13 C 1.47857 * 126.42387 * 179.79445 * 12 11 10 14 14 C 1.39993 * 120.55598 * 359.40750 * 13 12 11 15 15 C 1.38366 * 118.28475 * 180.27246 * 14 13 12 16 16 C 1.38340 * 119.30792 * 359.97438 * 15 14 13 17 17 N 1.31917 * 121.07497 * 0.02562 * 16 15 14 18 18 C 1.31696 * 121.87971 * 0.02562 * 17 16 15 19 19 N 1.31725 * 107.14561 * 359.52838 * 12 11 10 20 20 H 0.96996 * 120.00079 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.85828 * 0.25096 * 14 13 12 22 22 H 1.07999 * 120.34279 * 180.02562 * 15 14 13 23 23 H 1.08003 * 119.46492 * 180.02562 * 16 15 14 24 24 H 1.07998 * 119.72212 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0073 -1.2119 0.0005 8 1 3.0872 -1.2119 0.0010 9 6 1.2983 -2.4398 0.0005 10 7 -0.0125 -2.5879 -0.0004 11 8 -0.2989 -3.7663 -0.0065 12 6 0.8176 -4.5129 0.0003 13 6 0.8861 -5.9899 0.0004 14 6 -0.2851 -6.7567 0.0055 15 6 -0.1663 -8.1352 0.0112 16 6 1.0938 -8.7063 0.0111 17 7 2.1803 -7.9583 0.0063 18 6 2.1191 -6.6427 0.0018 19 7 1.8401 -3.6824 0.0009 20 1 -0.4850 0.8400 -0.0004 21 1 -1.2563 -6.2845 0.0053 22 1 -1.0480 -8.7588 0.0148 23 1 1.1895 -9.7821 0.0152 24 1 3.0311 -6.0643 -0.0026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071499745.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = 68.156440 kcal Electronic energy + Delta-G solvation = -13357.022249 eV Core-core repulsion = 10851.425576 eV Total energy + Delta-G solvation = -2505.596673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.35366 -40.99915 -36.57618 -35.36170 -34.12171 -32.88593 -30.96537 -28.70537 -25.50915 -24.82084 -23.49219 -22.63745 -19.67022 -18.26975 -18.21394 -17.72628 -17.22213 -16.76368 -16.26070 -15.03397 -14.93351 -14.75210 -14.08921 -13.41084 -13.15271 -13.13639 -12.87948 -12.44315 -12.41918 -11.98548 -11.75127 -11.29732 -10.92738 -10.55996 -10.53284 -9.65849 -8.68839 -6.85644 -0.40267 0.22540 1.14899 1.36983 1.38467 1.54914 2.00648 2.18252 2.30854 2.83640 3.17422 3.31178 3.52208 3.85650 3.97481 4.21114 4.42493 4.46586 4.76021 4.86460 5.11240 5.15831 5.22280 5.58191 5.68071 6.12049 6.35571 6.69960 6.89291 8.21863 8.35899 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.081013 B = 0.006601 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.538592 B = 4240.449495 C = 4576.137983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.022 3.978 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.097 0.903 9 C 0.264 3.736 10 N -0.457 5.457 11 O 0.022 5.978 12 C 0.174 3.826 13 C -0.079 4.079 14 C -0.050 4.050 15 C -0.153 4.153 16 C 0.112 3.888 17 N -0.502 5.502 18 C 0.136 3.864 19 N -0.532 5.532 20 H 0.288 0.712 21 H 0.153 0.847 22 H 0.189 0.811 23 H 0.203 0.797 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -12.305 0.018 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.196 4.196 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.508 4.508 8 H 0.115 0.885 9 C 0.012 3.988 10 N -0.186 5.186 11 O -0.019 6.019 12 C -0.045 4.045 13 C -0.084 4.084 14 C -0.077 4.077 15 C -0.172 4.172 16 C -0.046 4.046 17 N -0.210 5.210 18 C -0.022 4.022 19 N -0.272 5.272 20 H 0.098 0.902 21 H 0.171 0.829 22 H 0.206 0.794 23 H 0.220 0.780 24 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.557 -11.917 0.024 11.930 hybrid contribution -0.601 1.324 -0.014 1.454 sum -1.157 -10.592 0.010 10.655 Atomic orbital electron populations 1.69962 1.09174 1.30601 1.34278 1.27035 0.95926 1.05081 0.91524 0.84770 0.78547 0.73913 0.79742 1.18264 1.18828 1.17591 1.18903 0.94802 0.87133 1.49970 0.88519 1.22736 0.86487 0.92884 0.96655 1.75519 1.16476 0.91684 1.34927 1.85219 1.34483 1.13245 1.68960 1.26544 0.82896 0.95759 0.99309 1.18503 0.97575 0.84040 1.08239 1.22026 0.97643 0.95133 0.92902 1.22523 1.01039 0.93618 0.99995 1.23757 0.87382 1.02146 0.91291 1.67856 1.34416 1.05172 1.13597 1.22777 0.96147 0.90602 0.92660 1.72155 1.29662 1.00508 1.24855 0.90165 0.82907 0.79424 0.78005 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.72 11.97 21.82 0.26 -46.46 14 2 C 0.02 1.18 5.49 85.27 0.47 1.65 14 3 Si 1.01 40.10 29.56 68.60 2.03 42.13 14 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 14 5 H -0.26 -9.82 7.11 99.48 0.71 -9.12 14 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 14 7 C -0.47 -27.56 9.52 23.56 0.22 -27.33 14 8 H 0.10 5.39 7.85 -2.91 -0.02 5.37 14 9 C 0.26 16.07 7.67 135.01 1.04 17.10 14 10 N -0.46 -27.90 10.46 -59.74 -0.62 -28.52 14 11 O 0.02 1.19 11.17 68.52 0.77 1.96 14 12 C 0.17 8.35 8.01 87.31 0.70 9.05 14 13 C -0.08 -2.83 5.89 -20.00 -0.12 -2.95 14 14 C -0.05 -1.31 9.87 22.73 0.22 -1.08 14 15 C -0.15 -2.68 10.10 22.32 0.23 -2.45 14 16 C 0.11 2.12 11.17 84.70 0.95 3.07 14 17 N -0.50 -14.00 10.35 -194.77 -2.02 -16.02 14 18 C 0.14 4.57 10.87 85.02 0.92 5.49 14 19 N -0.53 -29.13 11.30 -305.31 -3.45 -32.58 14 20 H 0.29 14.84 8.29 -92.71 -0.77 14.07 14 21 H 0.15 3.69 8.01 -2.91 -0.02 3.67 14 22 H 0.19 1.54 8.06 -2.91 -0.02 1.52 14 23 H 0.20 1.97 8.06 -2.91 -0.02 1.95 14 24 H 0.15 5.44 7.88 -2.91 -0.02 5.42 14 Total: -1.00 -74.78 232.86 2.83 -71.95 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.24 Total: 4.99 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 4.63 Total: 2.55 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.83 Total: -123.58 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.77 Total: 1.96 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -74.78 2.83 -71.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071499745.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.107 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds