Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30471 * 1 3 3 Si 1.86805 * 120.00130 * 2 1 4 4 H 1.48497 * 109.46635 * 239.99924 * 3 2 1 5 5 H 1.48501 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47103 * 119.99771 * 3 2 1 7 7 C 1.40530 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.39878 * 120.00249 * 0.02562 * 7 2 1 10 10 N 1.32026 * 118.34213 * 180.02562 * 9 7 2 11 11 C 1.33963 * 121.56574 * 179.97438 * 10 9 7 12 12 C 1.40274 * 121.71913 * 180.02562 * 11 10 9 13 13 C 1.37660 * 119.60189 * 179.97438 * 12 11 10 14 14 C 1.38905 * 120.84641 * 359.97438 * 13 12 11 15 15 C 1.38221 * 120.67767 * 359.97438 * 14 13 12 16 16 C 1.38912 * 119.58189 * 0.02562 * 15 14 13 17 17 C 1.47226 * 121.95939 * 180.02562 * 16 15 14 18 18 O 1.21595 * 121.28829 * 359.95717 * 17 16 15 19 19 O 1.34799 * 118.33700 * 359.97438 * 9 7 2 20 20 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.19909 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.57156 * 180.27938 * 13 12 11 23 23 H 1.08001 * 119.65980 * 180.02562 * 14 13 12 24 24 H 1.08004 * 120.20604 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 3.0925 1.6963 -1.2125 5 1 1.2738 2.7465 -0.0006 6 1 3.0924 1.6964 1.2125 7 6 2.0073 -1.2171 0.0005 8 1 3.0874 -1.2171 0.0010 9 6 1.3079 -2.4284 0.0005 10 7 2.0009 -3.5522 0.0016 11 6 1.3973 -4.7482 0.0022 12 6 2.1304 -5.9442 0.0038 13 6 1.4652 -7.1494 0.0049 14 6 0.0770 -7.1968 0.0049 15 6 -0.6683 -6.0327 0.0044 16 6 -0.0207 -4.8038 0.0033 17 6 -0.7625 -3.5320 0.0032 18 8 -1.9783 -3.5101 0.0034 19 8 -0.0395 -2.3893 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 3.2101 -5.9196 0.0042 22 1 2.0301 -8.0699 0.0107 23 1 -0.4252 -8.1529 0.0062 24 1 -1.7474 -6.0784 0.0048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075577062.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = -46.679726 kcal Electronic energy + Delta-G solvation = -13792.112341 eV Core-core repulsion = 11249.243248 eV Total energy + Delta-G solvation = -2542.869093 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37354 -37.47043 -36.95818 -34.19764 -33.46677 -30.30900 -29.75073 -26.79785 -23.75764 -22.94216 -21.09175 -19.13752 -18.05126 -17.02925 -16.01486 -15.39036 -15.35464 -14.35145 -14.13170 -13.48421 -13.23895 -12.91716 -12.33977 -12.07824 -12.00657 -11.54298 -11.47408 -11.10190 -10.81568 -10.75458 -9.92262 -9.75039 -9.36641 -8.36980 -8.34089 -7.43970 -7.42551 -5.38421 1.65068 1.85510 2.74342 2.74720 2.81175 3.29992 3.45196 3.58789 3.85361 4.38853 5.18937 5.22603 5.43918 5.61228 5.75608 6.04503 6.26940 6.39116 6.48330 6.83769 6.97879 7.12292 7.24383 7.48474 7.60576 7.72423 7.85130 8.22888 8.49374 9.42788 9.70923 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.050074 B = 0.009300 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.035527 B = 3009.902485 C = 3559.096456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.054 3.946 3 Si 0.943 3.057 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.364 4.364 8 H 0.129 0.871 9 C 0.412 3.588 10 N -0.655 5.655 11 C 0.251 3.749 12 C -0.182 4.182 13 C -0.054 4.054 14 C -0.230 4.230 15 C -0.004 4.004 16 C -0.327 4.327 17 C 0.519 3.481 18 O -0.495 6.495 19 O -0.270 6.270 20 H 0.300 0.700 21 H 0.121 0.879 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -1.514 0.007 3.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.177 4.177 3 Si 0.764 3.236 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.395 4.395 8 H 0.146 0.854 9 C 0.240 3.760 10 N -0.394 5.394 11 C 0.126 3.874 12 C -0.203 4.203 13 C -0.073 4.073 14 C -0.250 4.250 15 C -0.023 4.023 16 C -0.334 4.334 17 C 0.367 3.633 18 O -0.384 6.384 19 O -0.174 6.174 20 H 0.113 0.887 21 H 0.139 0.861 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.872 -1.086 0.008 3.070 hybrid contribution -0.625 0.387 0.000 0.735 sum 2.246 -0.699 0.007 2.353 Atomic orbital electron populations 1.69682 1.08139 1.31833 1.23492 1.26636 0.95337 1.03357 0.92376 0.85750 0.79765 0.77067 0.80999 1.17775 1.19406 1.17770 1.19630 0.96263 0.86237 1.37358 0.85381 1.21266 0.75081 0.93676 0.86018 1.68912 1.34516 0.95497 1.40446 1.18754 0.88598 0.92863 0.87174 1.20619 0.99146 0.90202 1.10313 1.20946 0.94262 0.96837 0.95291 1.20656 0.93854 0.96978 1.13530 1.20706 0.98960 0.90959 0.91660 1.20562 0.95479 0.94183 1.23187 1.20677 0.86793 0.82770 0.73069 1.90726 1.11981 1.86727 1.48983 1.84458 1.21421 1.35244 1.76317 0.88744 0.86064 0.86951 0.87132 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.86 11.43 55.58 0.64 -16.23 14 2 C 0.05 1.18 5.50 -17.27 -0.10 1.08 14 3 Si 0.94 15.68 29.56 -169.99 -5.03 10.66 14 4 H -0.25 -4.13 7.11 56.52 0.40 -3.73 14 5 H -0.27 -4.35 7.11 56.52 0.40 -3.95 14 6 H -0.25 -4.13 7.11 56.52 0.40 -3.73 14 7 C -0.36 -8.70 9.28 -38.10 -0.35 -9.06 14 8 H 0.13 2.80 7.85 -52.48 -0.41 2.39 14 9 C 0.41 10.89 7.49 -16.85 -0.13 10.77 14 10 N -0.65 -16.91 10.21 -11.12 -0.11 -17.02 14 11 C 0.25 6.13 6.63 -84.76 -0.56 5.57 14 12 C -0.18 -3.73 10.06 -39.03 -0.39 -4.12 14 13 C -0.05 -0.95 10.00 -39.55 -0.40 -1.35 14 14 C -0.23 -4.19 10.03 -39.34 -0.39 -4.58 14 15 C 0.00 -0.09 9.68 -39.34 -0.38 -0.47 14 16 C -0.33 -8.04 5.91 -104.59 -0.62 -8.66 14 17 C 0.52 14.02 8.26 34.38 0.28 14.30 14 18 O -0.50 -13.79 17.47 -19.23 -0.34 -14.13 14 19 O -0.27 -7.50 7.36 -22.78 -0.17 -7.67 14 20 H 0.30 6.27 8.29 -40.82 -0.34 5.93 14 21 H 0.12 2.28 8.06 -52.48 -0.42 1.86 14 22 H 0.11 1.56 8.06 -52.49 -0.42 1.14 14 23 H 0.11 1.65 8.06 -52.49 -0.42 1.23 14 24 H 0.12 2.32 7.83 -52.48 -0.41 1.91 14 LS Contribution 228.33 15.07 3.44 3.44 Total: -1.00 -28.60 228.33 -5.83 -34.42 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -1.23 Total: 3.05 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.03 Total: 3.48 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.52 Total: -33.25 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.50 Total: -21.80 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.66 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.60 -5.83 -34.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577062.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.258 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds