Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30471 * 1 3 3 Si 1.86805 * 120.00130 * 2 1 4 4 H 1.48497 * 109.46635 * 239.99924 * 3 2 1 5 5 H 1.48501 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47103 * 119.99771 * 3 2 1 7 7 C 1.40530 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.39878 * 120.00249 * 0.02562 * 7 2 1 10 10 N 1.32026 * 118.34213 * 180.02562 * 9 7 2 11 11 C 1.33963 * 121.56574 * 179.97438 * 10 9 7 12 12 C 1.40274 * 121.71913 * 180.02562 * 11 10 9 13 13 C 1.37660 * 119.60189 * 179.97438 * 12 11 10 14 14 C 1.38905 * 120.84641 * 359.97438 * 13 12 11 15 15 C 1.38221 * 120.67767 * 359.97438 * 14 13 12 16 16 C 1.38912 * 119.58189 * 0.02562 * 15 14 13 17 17 C 1.47226 * 121.95939 * 180.02562 * 16 15 14 18 18 O 1.21595 * 121.28829 * 359.95717 * 17 16 15 19 19 O 1.34799 * 118.33700 * 359.97438 * 9 7 2 20 20 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.19909 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.57156 * 180.27938 * 13 12 11 23 23 H 1.08001 * 119.65980 * 180.02562 * 14 13 12 24 24 H 1.08004 * 120.20604 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 3.0925 1.6963 -1.2125 5 1 1.2738 2.7465 -0.0006 6 1 3.0924 1.6964 1.2125 7 6 2.0073 -1.2171 0.0005 8 1 3.0874 -1.2171 0.0010 9 6 1.3079 -2.4284 0.0005 10 7 2.0009 -3.5522 0.0016 11 6 1.3973 -4.7482 0.0022 12 6 2.1304 -5.9442 0.0038 13 6 1.4652 -7.1494 0.0049 14 6 0.0770 -7.1968 0.0049 15 6 -0.6683 -6.0327 0.0044 16 6 -0.0207 -4.8038 0.0033 17 6 -0.7625 -3.5320 0.0032 18 8 -1.9783 -3.5101 0.0034 19 8 -0.0395 -2.3893 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 3.2101 -5.9196 0.0042 22 1 2.0301 -8.0699 0.0107 23 1 -0.4252 -8.1529 0.0062 24 1 -1.7474 -6.0784 0.0048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577062.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = -65.650435 kcal Electronic energy + Delta-G solvation = -13792.934973 eV Core-core repulsion = 11249.243248 eV Total energy + Delta-G solvation = -2543.691725 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.28892 -39.17932 -38.97799 -35.98123 -35.26803 -31.97521 -31.52370 -28.55020 -25.58236 -24.74913 -22.83017 -20.89278 -19.86673 -18.79331 -17.86265 -17.42308 -17.03084 -16.09860 -15.68457 -15.21324 -14.80958 -14.63052 -14.29221 -13.81737 -13.59576 -13.31386 -12.96509 -12.70388 -12.36737 -12.07500 -11.68866 -11.33508 -11.31235 -10.27552 -9.98676 -9.22096 -9.11999 -7.20469 -0.10308 0.13719 1.28778 1.35557 1.49931 1.57713 1.90059 1.95802 2.07659 2.71038 3.33806 3.40007 3.81909 4.00319 4.30517 4.51366 4.66353 4.69414 4.88214 5.23540 5.37781 5.46641 5.64875 5.69260 5.84092 6.02801 6.09858 6.39422 6.48570 7.73842 7.86038 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.050074 B = 0.009300 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.035527 B = 3009.902485 C = 3559.096456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.014 3.986 3 Si 1.027 2.973 4 H -0.244 1.244 5 H -0.261 1.261 6 H -0.244 1.244 7 C -0.376 4.376 8 H 0.144 0.856 9 C 0.373 3.627 10 N -0.672 5.672 11 C 0.218 3.782 12 C -0.189 4.189 13 C -0.034 4.034 14 C -0.205 4.205 15 C -0.022 4.022 16 C -0.355 4.355 17 C 0.501 3.499 18 O -0.525 6.525 19 O -0.289 6.289 20 H 0.311 0.689 21 H 0.137 0.863 22 H 0.167 0.833 23 H 0.157 0.843 24 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -2.751 0.011 5.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.212 4.212 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.185 1.185 6 H -0.167 1.167 7 C -0.407 4.407 8 H 0.161 0.839 9 C 0.202 3.798 10 N -0.412 5.412 11 C 0.094 3.906 12 C -0.210 4.210 13 C -0.053 4.053 14 C -0.225 4.225 15 C -0.041 4.041 16 C -0.362 4.362 17 C 0.351 3.649 18 O -0.417 6.417 19 O -0.194 6.194 20 H 0.123 0.877 21 H 0.155 0.845 22 H 0.185 0.815 23 H 0.174 0.826 24 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.474 -2.379 0.011 5.067 hybrid contribution -1.114 0.576 -0.001 1.254 sum 3.359 -1.803 0.010 3.813 Atomic orbital electron populations 1.69748 1.10254 1.33612 1.24068 1.27835 0.95910 1.06771 0.90681 0.84582 0.78267 0.71471 0.81541 1.16718 1.18483 1.16711 1.20190 0.97122 0.86539 1.36812 0.83868 1.21922 0.74778 0.95066 0.88061 1.68891 1.34676 0.96053 1.41577 1.19271 0.89008 0.93754 0.88529 1.20962 1.00052 0.89854 1.10084 1.21538 0.94355 0.97697 0.91665 1.21228 0.94243 0.97506 1.09487 1.20962 0.99660 0.90909 0.92537 1.20667 0.95814 0.94111 1.25612 1.21260 0.86878 0.83865 0.72868 1.90662 1.12869 1.87271 1.50879 1.84402 1.22358 1.36045 1.76596 0.87681 0.84490 0.81511 0.82555 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.08 11.43 21.92 0.25 -36.83 14 2 C 0.01 0.63 5.50 85.45 0.47 1.10 14 3 Si 1.03 31.29 29.56 68.60 2.03 33.32 14 4 H -0.24 -7.02 7.11 99.48 0.71 -6.31 14 5 H -0.26 -7.52 7.11 99.48 0.71 -6.81 14 6 H -0.24 -7.01 7.11 99.48 0.71 -6.31 14 7 C -0.38 -18.46 9.28 23.23 0.22 -18.25 14 8 H 0.14 6.33 7.85 -2.91 -0.02 6.31 14 9 C 0.37 20.68 7.49 85.06 0.64 21.32 14 10 N -0.67 -35.80 10.21 -302.55 -3.09 -38.88 14 11 C 0.22 10.74 6.63 40.22 0.27 11.01 14 12 C -0.19 -7.33 10.06 22.63 0.23 -7.10 14 13 C -0.03 -1.03 10.00 22.29 0.22 -0.80 14 14 C -0.21 -6.59 10.03 22.43 0.23 -6.36 14 15 C -0.02 -0.91 9.68 22.43 0.22 -0.69 14 16 C -0.35 -17.90 5.91 -19.84 -0.12 -18.02 14 17 C 0.50 28.62 8.26 70.18 0.58 29.20 14 18 O -0.53 -30.93 17.47 19.42 0.34 -30.59 14 19 O -0.29 -17.03 7.36 6.71 0.05 -16.98 14 20 H 0.31 13.33 8.29 -92.71 -0.77 12.56 14 21 H 0.14 4.81 8.06 -2.91 -0.02 4.78 14 22 H 0.17 3.40 8.06 -2.91 -0.02 3.38 14 23 H 0.16 3.67 8.06 -2.91 -0.02 3.64 14 24 H 0.12 4.79 7.83 -2.91 -0.02 4.77 14 Total: -1.00 -66.32 228.33 3.76 -62.56 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.24 Total: 16.02 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 2.94 Total: 11.40 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.84 Total: -75.72 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: 0.39 Total: -47.57 kcal Atomic # 14 Polarization: 31.29 SS G_CDS: 2.03 Total: 33.32 kcal Total: -66.32 3.76 -62.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577062.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.093 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds