Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31103 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48496 * 109.47403 * 275.71825 * 3 2 1 5 5 H 1.48502 * 109.47211 * 35.71771 * 3 2 1 6 6 H 1.48504 * 109.47285 * 155.71284 * 3 2 1 7 7 C 1.39352 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 343.68079 * 7 2 1 9 9 N 1.36672 * 119.99753 * 163.68018 * 7 2 1 10 10 C 1.37664 * 126.46876 * 142.56817 * 9 7 2 11 11 C 1.46760 * 125.22378 * 0.02562 * 10 9 7 12 12 O 1.21311 * 120.00123 * 175.18342 * 11 10 9 13 13 N 1.31427 * 109.55803 * 179.97438 * 10 9 7 14 14 C 1.34196 * 109.71563 * 0.02562 * 13 10 9 15 15 C 1.40392 * 133.57760 * 180.02562 * 14 13 10 16 16 C 1.36984 * 118.25003 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.76881 * 359.97438 * 16 15 14 18 18 N 1.31670 * 121.44589 * 0.03021 * 17 16 15 19 19 C 1.32377 * 121.47406 * 359.94887 * 18 17 16 20 20 H 0.97001 * 120.00662 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99234 * 355.18126 * 11 10 9 22 22 H 1.08003 * 120.87803 * 359.97193 * 15 14 13 23 23 H 1.08004 * 120.12082 * 180.02562 * 16 15 14 24 24 H 1.08001 * 119.27613 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 2.3717 2.1162 -1.3930 5 1 1.5081 2.6148 0.8174 6 1 3.5978 1.4084 0.5759 7 6 2.0078 -1.2068 0.0005 8 1 1.5005 -2.1231 0.2638 9 7 3.3332 -1.2307 -0.3321 10 6 4.3059 -2.0204 0.2385 11 6 4.0842 -2.9885 1.3189 12 8 4.9936 -3.6991 1.6927 13 7 5.4634 -1.7750 -0.3337 14 6 5.3102 -0.8373 -1.2814 15 6 6.1928 -0.2143 -2.1780 16 6 5.6883 0.7274 -3.0354 17 6 4.3361 1.0390 -2.9987 18 7 3.5178 0.4482 -2.1532 19 6 3.9480 -0.4695 -1.3017 20 1 -0.4851 0.8400 -0.0004 21 1 3.1114 -3.0683 1.7812 22 1 7.2418 -0.4708 -2.1915 23 1 6.3402 1.2252 -3.7381 24 1 3.9468 1.7824 -3.6786 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076080877.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = 40.231690 kcal Electronic energy + Delta-G solvation = -14051.317565 eV Core-core repulsion = 11544.509984 eV Total energy + Delta-G solvation = -2506.807581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.21779 -40.00338 -38.92386 -36.30350 -34.27487 -32.51004 -30.79608 -27.47741 -26.89399 -23.92093 -23.24852 -21.33594 -20.33148 -18.90019 -18.11923 -17.28953 -16.81088 -16.49519 -16.29395 -15.87745 -15.16503 -15.00738 -14.73117 -14.28611 -13.66553 -13.40124 -13.26555 -12.73018 -12.21564 -12.14145 -11.68331 -11.16863 -11.03299 -9.96112 -9.72298 -9.34568 -9.00386 -6.73965 -0.50001 0.52545 0.80315 1.19964 1.29741 1.33578 1.84863 2.01917 2.20468 2.67877 2.95055 3.00975 3.62025 3.88902 4.06101 4.18776 4.32767 4.46971 4.77133 4.94211 5.23528 5.25957 5.50973 5.72233 5.84577 6.20979 6.42298 6.67526 6.96488 7.18033 8.05075 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.019458 C = 0.011130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.545485 B = 1438.632062 C = 2515.199199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.073 3.927 3 Si 0.944 3.056 4 H -0.214 1.214 5 H -0.283 1.283 6 H -0.304 1.304 7 C -0.364 4.364 8 H 0.129 0.871 9 N -0.261 5.261 10 C 0.085 3.915 11 C 0.445 3.555 12 O -0.476 6.476 13 N -0.480 5.480 14 C -0.031 4.031 15 C -0.036 4.036 16 C -0.167 4.167 17 C 0.115 3.885 18 N -0.495 5.495 19 C 0.139 3.861 20 H 0.300 0.700 21 H 0.166 0.834 22 H 0.159 0.841 23 H 0.191 0.809 24 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 4.619 -4.562 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.144 4.144 3 Si 0.771 3.229 4 H -0.138 1.138 5 H -0.210 1.210 6 H -0.232 1.232 7 C -0.493 4.493 8 H 0.146 0.854 9 N 0.065 4.935 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.345 6.345 13 N -0.205 5.205 14 C -0.164 4.164 15 C -0.064 4.064 16 C -0.189 4.189 17 C -0.059 4.059 18 N -0.208 5.208 19 C -0.097 4.097 20 H 0.111 0.889 21 H 0.182 0.818 22 H 0.176 0.824 23 H 0.208 0.792 24 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.043 3.911 -3.859 7.458 hybrid contribution -0.044 0.708 -0.006 0.710 sum 4.998 4.619 -3.864 7.827 Atomic orbital electron populations 1.69556 1.07375 1.31531 1.37295 1.25859 0.95744 1.01673 0.91106 0.85694 0.76754 0.79419 0.81019 1.13761 1.21034 1.23156 1.19608 0.81284 0.98374 1.50007 0.85382 1.41301 1.07637 1.24864 1.19676 1.24695 0.83394 1.04932 1.03926 1.23459 0.93807 0.75298 0.77199 1.90486 1.48300 1.37757 1.57958 1.70029 1.23528 1.16709 1.10263 1.20085 0.94072 1.00664 1.01555 1.20905 0.99634 0.94128 0.91710 1.21986 0.96666 0.99160 1.01101 1.23354 0.90751 0.97462 0.94369 1.66456 1.40994 1.07949 1.05446 1.19538 0.92272 1.01483 0.96381 0.88886 0.81830 0.82362 0.79213 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.14 13.94 21.72 0.30 -41.84 14 2 C 0.07 3.70 5.44 85.07 0.46 4.16 14 3 Si 0.94 43.45 24.46 68.60 1.68 45.13 14 4 H -0.21 -9.29 6.01 99.48 0.60 -8.69 14 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 14 6 H -0.30 -15.55 6.95 99.48 0.69 -14.86 14 7 C -0.36 -18.56 9.94 84.21 0.84 -17.72 14 8 H 0.13 6.39 8.06 -2.91 -0.02 6.36 14 9 N -0.26 -13.14 2.53 -340.72 -0.86 -14.00 14 10 C 0.08 4.03 7.70 135.82 1.05 5.08 14 11 C 0.44 17.75 11.32 70.05 0.79 18.55 14 12 O -0.48 -20.66 17.89 -3.12 -0.06 -20.72 14 13 N -0.48 -23.56 11.20 -181.83 -2.04 -25.59 14 14 C -0.03 -1.40 7.22 40.01 0.29 -1.11 14 15 C -0.04 -1.22 10.19 22.50 0.23 -0.99 14 16 C -0.17 -4.49 10.03 22.11 0.22 -4.27 14 17 C 0.11 3.70 11.09 84.85 0.94 4.64 14 18 N -0.49 -21.88 6.19 -192.23 -1.19 -23.07 14 19 C 0.14 6.76 5.84 133.98 0.78 7.54 14 20 H 0.30 13.91 8.30 -92.71 -0.77 13.14 14 21 H 0.17 5.14 7.91 -2.91 -0.02 5.12 14 22 H 0.16 4.34 8.06 -2.91 -0.02 4.31 14 23 H 0.19 2.93 8.06 -2.91 -0.02 2.90 14 24 H 0.20 4.44 8.06 -2.91 -0.02 4.42 14 Total: -1.00 -67.62 223.48 4.55 -63.08 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.11 Total: 1.15 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 5.60 Total: 15.87 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.78 Total: -104.51 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.68 Total: 45.13 kcal Total: -67.62 4.55 -63.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076080877.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.308 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds