Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47123 * 270.00090 * 3 2 1 5 5 H 1.48497 * 109.46762 * 30.00439 * 3 2 1 6 6 H 1.48499 * 109.46959 * 150.00559 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40063 * 66.46644 * 9 7 2 11 11 O 1.42097 * 106.40586 * 293.54222 * 9 7 2 12 12 N 1.65608 * 107.21621 * 180.02562 * 9 7 2 13 13 C 1.30947 * 119.99843 * 179.97438 * 12 9 7 14 14 N 1.37021 * 126.31242 * 359.69234 * 13 12 9 15 15 H 0.97003 * 126.09571 * 0.02562 * 14 13 12 16 16 C 1.38918 * 107.80007 * 179.87539 * 14 13 12 17 17 C 1.32610 * 108.51267 * 0.38965 * 16 14 13 18 18 N 1.37011 * 126.31419 * 179.97438 * 13 12 9 19 19 H 0.96997 * 126.09895 * 359.97438 * 18 13 12 20 20 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 21 21 H 1.08001 * 125.74161 * 180.14968 * 16 14 13 22 22 H 1.08002 * 125.74405 * 179.78128 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 1.8607 -5.1862 0.0000 14 7 0.5659 -5.6344 0.0065 15 1 -0.2305 -5.0807 0.0112 16 6 0.5972 -7.0232 0.0016 17 6 1.8639 -7.4158 0.0011 18 7 2.6750 -6.2880 -0.0005 19 1 3.6450 -6.2818 -0.0015 20 1 -0.4850 0.8400 0.0004 21 1 -0.2649 -7.6737 0.0025 22 1 2.2070 -8.4399 0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082457914.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -54.436236 kcal Electronic energy + Delta-G solvation = -12660.666676 eV Core-core repulsion = 10149.364843 eV Total energy + Delta-G solvation = -2511.301833 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 217.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.76417 -37.26669 -36.18892 -35.50662 -34.74798 -34.33099 -29.19838 -28.28194 -23.72353 -22.60630 -21.33797 -19.64632 -18.71085 -17.69408 -17.14490 -16.72921 -16.72275 -15.89336 -15.81210 -15.12363 -14.15201 -14.00612 -13.46676 -13.22519 -13.03010 -12.57478 -12.39299 -12.29578 -11.92308 -11.82108 -11.27232 -10.93380 -10.69405 -8.81297 -8.68948 -7.51326 0.41780 1.12755 1.29485 1.33491 1.42397 1.48457 1.51021 2.20295 2.53928 2.63724 3.33002 3.68525 4.23252 4.40357 4.72704 4.81567 4.85744 5.17682 5.43679 5.82837 5.96207 6.29519 6.71222 6.81909 8.18600 Molecular weight = 217.03amu Principal moments of inertia in cm(-1) A = 0.078557 B = 0.009196 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.342684 B = 3044.021467 C = 3224.546082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 1.001 2.999 4 H -0.249 1.249 5 H -0.253 1.253 6 H -0.249 1.249 7 C -1.024 5.024 8 H 0.114 0.886 9 S 2.675 3.325 10 O -1.068 7.068 11 O -1.068 7.068 12 N -1.063 6.063 13 C 0.621 3.379 14 N -0.669 5.669 15 H 0.425 0.575 16 C -0.026 4.026 17 C 0.013 3.987 18 N -0.583 5.583 19 H 0.453 0.547 20 H 0.300 0.700 21 H 0.231 0.769 22 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -15.352 -0.004 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.151 4.151 3 Si 0.817 3.183 4 H -0.173 1.173 5 H -0.176 1.176 6 H -0.172 1.172 7 C -1.158 5.158 8 H 0.132 0.868 9 S 2.777 3.223 10 O -1.056 7.056 11 O -1.056 7.056 12 N -0.939 5.939 13 C 0.259 3.741 14 N -0.296 5.296 15 H 0.264 0.736 16 C -0.149 4.149 17 C -0.111 4.111 18 N -0.210 5.210 19 H 0.297 0.703 20 H 0.110 0.890 21 H 0.248 0.752 22 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.882 -15.057 0.000 15.550 hybrid contribution -0.049 1.446 -0.007 1.447 sum 3.833 -13.611 -0.007 14.141 Atomic orbital electron populations 1.69989 1.08764 1.32412 1.41541 1.26242 0.95716 1.05728 0.87405 0.85012 0.78999 0.73851 0.80452 1.17291 1.17639 1.17231 1.30383 1.06914 1.11628 1.66878 0.86792 1.01037 0.72324 0.76861 0.72054 1.93284 1.75989 1.89093 1.47230 1.93283 1.76017 1.89087 1.47199 1.74230 1.53264 1.06973 1.59417 1.18758 0.81424 0.87254 0.86650 1.44263 1.06781 1.10771 1.67767 0.73589 1.22907 1.01475 0.80839 1.09693 1.22980 0.87627 0.93538 1.06973 1.42505 1.10097 1.02347 1.66019 0.70275 0.88954 0.75217 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.74 13.19 21.45 0.28 -57.46 14 2 C 0.06 3.75 5.46 84.66 0.46 4.21 14 3 Si 1.00 45.21 29.54 68.60 2.03 47.23 14 4 H -0.25 -10.46 7.11 99.48 0.71 -9.76 14 5 H -0.25 -10.39 7.11 99.48 0.71 -9.68 14 6 H -0.25 -10.64 7.11 99.48 0.71 -9.93 14 7 C -1.02 -65.93 9.75 67.73 0.66 -65.27 14 8 H 0.11 6.87 7.81 -2.91 -0.02 6.85 14 9 S 2.67 167.26 3.87 -56.49 -0.22 167.04 14 10 O -1.07 -70.93 17.95 -128.00 -2.30 -73.23 14 11 O -1.07 -70.89 17.92 -128.00 -2.29 -73.18 14 12 N -1.06 -54.58 11.03 -58.80 -0.65 -55.23 14 13 C 0.62 24.73 8.79 260.74 2.29 27.03 14 14 N -0.67 -23.22 6.01 -196.35 -1.18 -24.40 14 15 H 0.42 16.58 8.09 -92.71 -0.75 15.83 14 16 C -0.03 -0.49 11.90 82.41 0.98 0.49 14 17 C 0.01 0.18 11.90 82.41 0.98 1.16 14 18 N -0.58 -14.22 6.27 -196.35 -1.23 -15.45 14 19 H 0.45 8.39 8.96 -92.71 -0.83 7.56 14 20 H 0.30 17.12 8.31 -92.71 -0.77 16.35 14 21 H 0.23 1.93 8.06 -2.91 -0.02 1.91 14 22 H 0.25 0.25 8.06 -2.91 -0.02 0.22 14 Total: -1.00 -97.22 224.20 -0.48 -97.71 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.30 Total: 19.34 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 5.38 Total: -32.38 kcal Atomic # 7 Polarization: -149.76 SS G_CDS: -2.78 Total: -152.53 kcal Atomic # 8 Polarization: -141.82 SS G_CDS: -4.59 Total: -146.41 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 167.26 SS G_CDS: -0.22 Total: 167.04 kcal Total: -97.22 -0.48 -97.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082457914.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.271 kcal (2) G-P(sol) polarization free energy of solvation -97.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds