Wall clock time and date at job start Mon Mar 30 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38244 * 120.03499 * 300.00040 * 12 2 1 14 14 C 1.38099 * 119.93379 * 179.97438 * 13 12 2 15 15 C 1.38497 * 120.22073 * 0.02874 * 14 13 12 16 16 C 1.38216 * 119.84505 * 359.97264 * 15 14 13 17 17 C 1.38105 * 120.02855 * 119.72474 * 12 2 1 18 18 C 1.51366 * 109.76054 * 180.02562 * 16 15 14 19 19 C 1.54350 * 105.16975 * 17.19822 * 18 16 15 20 20 C 1.51367 * 130.39783 * 180.02562 * 15 14 13 21 21 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08006 * 120.03403 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.89301 * 180.02562 * 14 13 12 27 27 H 1.08001 * 119.89444 * 0.02562 * 17 12 2 28 28 H 1.09006 * 110.30320 * 136.11892 * 18 16 15 29 29 H 1.09004 * 110.30735 * 258.27427 * 18 16 15 30 30 H 1.09004 * 110.82220 * 91.87249 * 19 18 16 31 31 H 1.08997 * 110.82287 * 215.23011 * 19 18 16 32 32 H 1.09008 * 110.29945 * 281.69637 * 20 15 14 33 33 H 1.09002 * 110.30430 * 43.84489 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 6 1.6988 -2.0341 -1.4497 14 6 2.1599 -2.6830 -2.5782 15 6 2.9563 -2.0125 -3.4915 16 6 3.2898 -0.6892 -3.2722 17 6 2.8216 -0.0384 -2.1428 18 6 4.1600 -0.1864 -4.4040 19 6 3.9616 -1.2030 -5.5483 20 6 3.5793 -2.4894 -4.7860 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7164 1.1670 3.4843 25 1 1.0776 -2.5599 -0.7397 26 1 1.8985 -3.7170 -2.7491 27 1 3.0785 0.9968 -1.9728 28 1 3.8354 0.8055 -4.7187 29 1 5.2053 -0.1631 -4.0959 30 1 3.1533 -0.8896 -6.2092 31 1 4.8863 -1.3412 -6.1085 32 1 4.4685 -3.0856 -4.5806 33 1 2.8582 -3.0700 -5.3613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084346171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:16 Heat of formation + Delta-G solvation = 0.881710 kcal Electronic energy + Delta-G solvation = -13989.269699 eV Core-core repulsion = 11785.555125 eV Total energy + Delta-G solvation = -2203.714575 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.53879 -36.07519 -33.45515 -31.16182 -30.24059 -27.53995 -26.63796 -25.09157 -22.13439 -21.51386 -20.43347 -18.82993 -16.22878 -15.57185 -15.24965 -14.78015 -14.38367 -13.95048 -12.83893 -12.69915 -12.56054 -12.31235 -12.13411 -11.64346 -11.40345 -11.02020 -10.96504 -10.94460 -10.85351 -10.50555 -10.30202 -10.15431 -9.96679 -9.36787 -8.96785 -8.35805 -8.04917 -7.53629 -5.99512 -4.06085 2.09821 2.15148 3.32389 3.36645 3.39975 4.39679 4.54376 4.77053 4.88725 5.12542 5.31136 5.49437 5.61049 5.65111 5.87613 5.90353 5.97530 6.01385 6.08625 6.27942 6.36550 6.41128 6.69257 6.80787 6.89973 7.05488 7.22452 7.24506 7.28716 7.41819 7.73063 7.81212 8.01289 8.11646 8.42072 8.96374 9.58226 11.06187 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.047295 B = 0.007098 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.884115 B = 3943.848160 C = 4042.340366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.034 0.966 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.028 4.028 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.075 4.075 21 H 0.028 0.972 22 H 0.085 0.915 23 H 0.008 0.992 24 H 0.261 0.739 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -3.746 -12.059 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.052 0.948 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.028 4.028 13 C -0.129 4.129 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.137 4.137 18 C -0.116 4.116 19 C -0.157 4.157 20 C -0.112 4.112 21 H 0.047 0.953 22 H 0.103 0.897 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.542 -3.623 -11.918 12.950 hybrid contribution 0.331 -0.471 0.998 1.152 sum 3.872 -4.094 -10.920 12.288 Atomic orbital electron populations 1.21780 0.97640 0.99269 1.00197 1.17882 0.92853 0.95400 0.88594 0.94826 1.21090 1.31229 1.12286 0.89891 0.92528 1.24963 0.95087 0.95002 0.98923 1.69881 1.36735 1.22837 1.23494 0.86640 0.79258 0.79757 0.82261 1.20288 1.21269 1.20249 1.20559 0.93066 0.93847 0.95364 1.20965 1.00538 0.95005 0.96408 1.20530 0.98872 0.98987 0.94706 1.20299 1.00679 0.95125 0.97117 1.20426 0.99040 0.94964 0.96052 1.20601 0.99655 0.99727 0.93733 1.20980 0.98832 0.98804 0.92981 1.22264 1.01156 0.95208 0.97072 1.20917 0.99575 0.97389 0.93280 0.95279 0.89676 0.97289 0.92911 0.85961 0.87463 0.87042 0.91327 0.90874 0.91379 0.91206 0.91154 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.79 37.16 0.33 -2.89 16 2 C 0.07 1.81 2.48 -92.92 -0.23 1.58 16 3 H 0.03 0.92 7.87 -51.93 -0.41 0.51 16 4 C -0.51 -13.99 8.24 -34.44 -0.28 -14.28 16 5 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 6 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 7 N -0.89 -25.44 11.33 55.43 0.63 -24.81 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.03 -0.64 4.73 -104.67 -0.50 -1.13 16 13 C -0.11 -2.31 8.71 -39.63 -0.35 -2.65 16 14 C -0.11 -2.03 10.04 -39.54 -0.40 -2.43 16 15 C -0.13 -2.25 6.14 -104.21 -0.64 -2.89 16 16 C -0.10 -1.86 6.14 -104.21 -0.64 -2.50 16 17 C -0.12 -2.42 9.67 -39.53 -0.38 -2.81 16 18 C -0.08 -1.08 6.77 -26.85 -0.18 -1.26 16 19 C -0.12 -1.38 7.08 -25.32 -0.18 -1.56 16 20 C -0.07 -0.97 6.77 -26.85 -0.18 -1.15 16 21 H 0.03 0.67 7.39 -51.93 -0.38 0.29 16 22 H 0.08 2.27 6.08 -51.93 -0.32 1.95 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.12 2.54 7.58 -52.48 -0.40 2.15 16 26 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 27 H 0.11 2.17 7.94 -52.49 -0.42 1.75 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -28.73 270.88 -8.87 -37.60 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.84 Total: -0.90 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -3.72 Total: -32.36 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.73 -8.87 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084346171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.483 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds