Wall clock time and date at job start Mon Mar 30 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38244 * 120.03499 * 300.00040 * 12 2 1 14 14 C 1.38099 * 119.93379 * 179.97438 * 13 12 2 15 15 C 1.38497 * 120.22073 * 0.02874 * 14 13 12 16 16 C 1.38216 * 119.84505 * 359.97264 * 15 14 13 17 17 C 1.38105 * 120.02855 * 119.72474 * 12 2 1 18 18 C 1.51366 * 109.76054 * 180.02562 * 16 15 14 19 19 C 1.54350 * 105.16975 * 17.19822 * 18 16 15 20 20 C 1.51367 * 130.39783 * 180.02562 * 15 14 13 21 21 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08006 * 120.03403 * 0.02562 * 13 12 2 26 26 H 1.08005 * 119.89301 * 180.02562 * 14 13 12 27 27 H 1.08001 * 119.89444 * 0.02562 * 17 12 2 28 28 H 1.09006 * 110.30320 * 136.11892 * 18 16 15 29 29 H 1.09004 * 110.30735 * 258.27427 * 18 16 15 30 30 H 1.09004 * 110.82220 * 91.87249 * 19 18 16 31 31 H 1.08997 * 110.82287 * 215.23011 * 19 18 16 32 32 H 1.09008 * 110.29945 * 281.69637 * 20 15 14 33 33 H 1.09002 * 110.30430 * 43.84489 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 6 1.6988 -2.0341 -1.4497 14 6 2.1599 -2.6830 -2.5782 15 6 2.9563 -2.0125 -3.4915 16 6 3.2898 -0.6892 -3.2722 17 6 2.8216 -0.0384 -2.1428 18 6 4.1600 -0.1864 -4.4040 19 6 3.9616 -1.2030 -5.5483 20 6 3.5793 -2.4894 -4.7860 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7164 1.1670 3.4843 25 1 1.0776 -2.5599 -0.7397 26 1 1.8985 -3.7170 -2.7491 27 1 3.0785 0.9968 -1.9728 28 1 3.8354 0.8055 -4.7187 29 1 5.2053 -0.1631 -4.0959 30 1 3.1533 -0.8896 -6.2092 31 1 4.8863 -1.3412 -6.1085 32 1 4.4685 -3.0856 -4.5806 33 1 2.8582 -3.0700 -5.3613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084346171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:16 Heat of formation + Delta-G solvation = -12.825821 kcal Electronic energy + Delta-G solvation = -13989.864102 eV Core-core repulsion = 11785.555125 eV Total energy + Delta-G solvation = -2204.308978 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91443 -37.60646 -35.24346 -32.89005 -31.80178 -28.94211 -27.95442 -27.22082 -23.66723 -23.12490 -21.55521 -20.48820 -18.26244 -17.05589 -16.51985 -16.44538 -15.89267 -15.50934 -14.72088 -13.99246 -13.89035 -13.84518 -13.63176 -13.31659 -13.01873 -12.80992 -12.67948 -12.40614 -12.20843 -12.07767 -11.95103 -11.68779 -11.45664 -11.19865 -10.98811 -10.49045 -9.53894 -9.04950 -8.11481 -6.26107 0.60966 0.65387 1.40094 1.41448 1.49539 2.41235 2.99518 3.16035 3.62327 3.78054 4.24500 4.25322 4.30875 4.34426 4.55232 4.78602 4.80856 4.83043 4.88877 4.96126 5.01997 5.08018 5.15335 5.21077 5.38695 5.40673 5.43089 5.53493 5.66688 5.70579 5.81804 6.02808 6.10872 6.29944 6.37838 6.81948 7.41544 8.92917 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.047295 B = 0.007098 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.884115 B = 3943.848160 C = 4042.340366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.071 3.929 3 H 0.001 0.999 4 C -0.523 4.523 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.270 1.270 12 C -0.059 4.059 13 C -0.129 4.129 14 C -0.112 4.112 15 C -0.130 4.130 16 C -0.110 4.110 17 C -0.139 4.139 18 C -0.081 4.081 19 C -0.111 4.111 20 C -0.073 4.073 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.022 0.978 24 H 0.263 0.737 25 H 0.111 0.889 26 H 0.137 0.863 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -5.290 -14.042 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 H 0.019 0.981 4 C -0.561 4.561 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.059 4.059 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.110 4.110 17 C -0.157 4.157 18 C -0.118 4.118 19 C -0.148 4.148 20 C -0.110 4.110 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.129 0.871 26 H 0.155 0.845 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.791 -5.170 -13.912 15.596 hybrid contribution -0.033 0.019 1.531 1.532 sum 4.758 -5.150 -12.381 14.229 Atomic orbital electron populations 1.21610 0.97348 0.99204 0.99565 1.17732 0.93201 0.93771 0.89999 0.98128 1.21348 1.31313 1.12263 0.91207 0.93256 1.25750 0.95245 0.95704 1.01835 1.70010 1.37547 1.23968 1.24159 0.85639 0.78690 0.78870 0.78649 1.19915 1.20574 1.19469 1.20316 0.95497 0.94881 0.95192 1.20929 1.01502 0.94478 0.97755 1.20812 0.98255 1.00273 0.93649 1.20917 0.99101 0.94750 0.98275 1.20916 0.98666 0.95544 0.95859 1.20660 1.00308 0.99782 0.94935 1.21128 0.98431 1.00025 0.92227 1.22305 1.03035 0.93223 0.96235 1.21052 1.00316 0.98532 0.91127 0.94913 0.92132 0.95879 0.92821 0.87084 0.84524 0.87629 0.90447 0.89792 0.90511 0.88195 0.89574 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.79 71.98 0.63 -5.48 16 2 C 0.07 3.83 2.48 -12.29 -0.03 3.79 16 3 H 0.00 0.03 7.87 -2.39 -0.02 0.01 16 4 C -0.52 -29.95 8.24 25.60 0.21 -29.73 16 5 H 0.05 2.82 7.60 -2.91 -0.02 2.80 16 6 C 0.01 0.75 5.31 84.66 0.45 1.20 16 7 N -0.92 -54.00 11.33 21.45 0.24 -53.76 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 C -0.06 -2.73 4.73 -19.89 -0.09 -2.83 16 13 C -0.13 -5.40 8.71 22.24 0.19 -5.21 16 14 C -0.11 -3.85 10.04 22.30 0.22 -3.63 16 15 C -0.13 -4.10 6.14 -19.60 -0.12 -4.22 16 16 C -0.11 -3.73 6.14 -19.60 -0.12 -3.85 16 17 C -0.14 -5.77 9.67 22.30 0.22 -5.55 16 18 C -0.08 -1.96 6.77 30.52 0.21 -1.76 16 19 C -0.11 -2.02 7.08 31.51 0.22 -1.79 16 20 C -0.07 -1.57 6.77 30.52 0.21 -1.36 16 21 H 0.03 1.58 7.39 -2.39 -0.02 1.56 16 22 H 0.06 3.37 6.08 -2.39 -0.01 3.35 16 23 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 25 H 0.11 4.77 7.58 -2.91 -0.02 4.75 16 26 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.11 4.33 7.94 -2.91 -0.02 4.31 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.61 270.88 5.54 -58.07 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.07 Total: 9.57 kcal Atomic # 6 Polarization: -62.61 SS G_CDS: 2.20 Total: -60.42 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.24 Total: -53.76 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.61 5.54 -58.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084346171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.247 kcal (2) G-P(sol) polarization free energy of solvation -63.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds