Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00447 * 2 1 4 4 H 1.48492 * 109.47147 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46798 * 29.99923 * 3 2 1 6 6 H 1.48496 * 109.47211 * 149.99664 * 3 2 1 7 7 C 1.37883 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99875 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47101 * 60.00321 * 9 7 2 11 11 N 1.46901 * 109.47388 * 300.00504 * 9 7 2 12 12 C 1.50696 * 109.47329 * 180.02562 * 9 7 2 13 13 C 1.38748 * 119.79410 * 79.99969 * 12 9 7 14 14 C 1.37848 * 120.68973 * 180.02562 * 13 12 9 15 15 C 1.38942 * 119.81404 * 0.02562 * 14 13 12 16 16 O 1.34812 * 133.49292 * 180.02562 * 15 14 13 17 17 C 1.34449 * 110.88880 * 179.97438 * 16 15 14 18 18 C 1.33992 * 110.15237 * 0.25052 * 17 16 15 19 19 C 1.40487 * 119.22548 * 0.02562 * 15 14 13 20 20 C 1.36736 * 119.79431 * 260.02848 * 12 9 7 21 21 H 0.97002 * 119.99744 * 0.02562 * 1 2 3 22 22 H 1.00900 * 110.99681 * 176.04523 * 11 9 7 23 23 H 1.00894 * 111.00087 * 299.99683 * 11 9 7 24 24 H 1.08000 * 119.65006 * 0.04845 * 13 12 9 25 25 H 1.07997 * 120.08951 * 179.97438 * 14 13 12 26 26 H 1.08002 * 124.91939 * 179.97438 * 17 16 15 27 27 H 1.08003 * 126.90513 * 179.74865 * 18 17 16 28 28 H 1.08005 * 120.14155 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4067 -2.5772 1.1991 12 6 2.2301 -3.6446 -0.0005 13 6 2.8370 -4.0328 1.1853 14 6 3.7358 -5.0778 1.2064 15 6 4.0400 -5.7512 0.0298 16 8 4.8551 -6.7841 -0.2640 17 6 4.8030 -7.0780 -1.5750 18 6 3.9567 -6.2488 -2.2007 19 6 3.4230 -5.3527 -1.1678 20 6 2.5154 -4.2946 -1.1692 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1572 -3.4138 1.1905 23 1 0.9649 -2.5260 2.0380 24 1 2.6024 -3.5111 2.1013 25 1 4.2029 -5.3716 2.1348 26 1 5.3656 -7.8652 -2.0549 27 1 3.7144 -6.2422 -3.2532 28 1 2.0405 -3.9888 -2.0898 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084346935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = 30.504305 kcal Electronic energy + Delta-G solvation = -13812.684225 eV Core-core repulsion = 11408.995177 eV Total energy + Delta-G solvation = -2403.689048 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02141 -37.92329 -34.16716 -32.40344 -31.49988 -29.49335 -28.48241 -25.92906 -23.05084 -22.44021 -20.94062 -20.09575 -17.05833 -16.71721 -16.16995 -15.72289 -15.08849 -14.48424 -13.88252 -13.65160 -13.47077 -12.73753 -12.43324 -12.38301 -11.80411 -11.52305 -11.23068 -10.83914 -10.61692 -10.38675 -9.86755 -9.81428 -9.23079 -8.43335 -7.90582 -7.74605 -7.08676 -5.88192 -4.03253 1.36339 1.95769 2.69239 3.12274 3.33979 3.40971 3.44298 4.27162 4.51382 4.79960 5.06036 5.36204 5.39096 5.59266 5.64730 5.92074 5.92991 6.13601 6.26492 6.33125 6.64693 6.74678 6.91814 7.06371 7.15446 7.55541 7.60786 7.90505 8.17817 8.61915 8.99516 9.13983 9.65571 11.16036 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.045632 B = 0.007450 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.460632 B = 3757.694229 C = 3880.721632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.256 3.744 10 H 0.047 0.953 11 N -0.809 5.809 12 C -0.088 4.088 13 C -0.085 4.085 14 C -0.116 4.116 15 C 0.027 3.973 16 O -0.203 6.203 17 C -0.011 4.011 18 C -0.209 4.209 19 C -0.133 4.133 20 C -0.077 4.077 21 H 0.256 0.744 22 H 0.299 0.701 23 H 0.317 0.683 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.201 0.799 27 H 0.152 0.848 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -11.215 -1.196 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.146 3.854 10 H 0.065 0.935 11 N -0.335 5.335 12 C -0.090 4.090 13 C -0.103 4.103 14 C -0.134 4.134 15 C -0.019 4.019 16 O -0.106 6.106 17 C -0.076 4.076 18 C -0.228 4.228 19 C -0.134 4.134 20 C -0.096 4.096 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.130 0.870 24 H 0.149 0.851 25 H 0.140 0.860 26 H 0.217 0.783 27 H 0.170 0.830 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.949 -10.527 -1.249 12.156 hybrid contribution 1.093 0.050 -0.067 1.096 sum 7.042 -10.477 -1.316 12.692 Atomic orbital electron populations 1.70104 1.05674 1.25734 1.46619 1.24948 0.94642 0.98544 0.94162 0.86743 0.80016 0.83978 0.78021 1.20766 1.21252 1.19993 1.20832 0.92247 0.89422 1.54530 0.92818 1.18195 0.87413 0.88702 0.91075 0.93476 1.59201 1.28019 1.42029 1.04272 1.21447 0.98556 0.97281 0.91749 1.20858 0.95391 0.94930 0.99144 1.19839 1.01637 0.97561 0.94401 1.19565 0.95127 0.91025 0.96190 1.83924 1.56129 1.44335 1.26166 1.23763 1.01541 1.01306 0.80971 1.22506 1.02092 0.98454 0.99766 1.19987 1.01205 0.99502 0.92712 1.20232 0.96871 0.93687 0.98837 0.93421 0.89092 0.87004 0.85127 0.85981 0.78270 0.83024 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.41 12.77 55.43 0.71 -23.70 15 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 15 3 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.53 -14.44 8.70 -34.44 -0.30 -14.74 15 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.26 6.22 2.84 -70.02 -0.20 6.02 15 10 H 0.05 1.26 7.98 -51.93 -0.41 0.84 15 11 N -0.81 -18.55 8.36 -6.65 -0.06 -18.60 15 12 C -0.09 -1.85 4.85 -104.98 -0.51 -2.36 15 13 C -0.08 -1.60 9.26 -39.54 -0.37 -1.97 15 14 C -0.12 -2.01 10.07 -39.46 -0.40 -2.41 15 15 C 0.03 0.49 7.42 -38.47 -0.29 0.21 15 16 O -0.20 -3.28 10.58 3.90 0.04 -3.23 15 17 C -0.01 -0.14 11.96 29.24 0.35 0.21 15 18 C -0.21 -3.05 11.14 -37.62 -0.42 -3.47 15 19 C -0.13 -2.44 6.40 -105.16 -0.67 -3.11 15 20 C -0.08 -1.54 9.65 -39.69 -0.38 -1.92 15 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.30 6.13 9.06 -39.29 -0.36 5.77 15 23 H 0.32 6.84 7.31 -39.29 -0.29 6.55 15 24 H 0.13 2.31 6.63 -52.49 -0.35 1.97 15 25 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 26 H 0.20 1.56 8.06 -52.49 -0.42 1.14 15 27 H 0.15 1.80 8.06 -52.48 -0.42 1.37 15 28 H 0.12 2.33 8.02 -52.48 -0.42 1.91 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -30.61 249.46 -6.48 -37.09 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.64 Total: 9.77 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.28 Total: -21.31 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.65 Total: -42.30 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.61 -6.48 -37.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084346935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.593 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds