Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31054 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48499 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47038 * 299.99755 * 3 2 1 6 6 H 1.48501 * 109.47266 * 59.99421 * 3 2 1 7 7 C 1.39737 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.40888 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.38898 * 126.92888 * 359.97174 * 9 7 2 11 11 N 1.35635 * 109.29060 * 180.02562 * 10 9 7 12 12 H 0.96997 * 124.69073 * 180.02562 * 11 10 9 13 13 C 1.38147 * 110.62285 * 0.02562 * 11 10 9 14 14 C 1.40393 * 107.88753 * 0.02562 * 13 11 10 15 15 C 1.39147 * 120.16098 * 180.02562 * 14 13 11 16 16 C 1.37917 * 119.69439 * 359.97438 * 15 14 13 17 17 C 1.38630 * 120.25051 * 359.76100 * 16 15 14 18 18 C 1.37904 * 120.62385 * 0.50281 * 17 16 15 19 19 C 1.50703 * 120.01427 * 179.75686 * 18 17 16 20 20 O 1.42898 * 109.47171 * 359.72594 * 19 18 17 21 21 H 0.96994 * 120.00740 * 0.02562 * 1 2 3 22 22 H 1.07996 * 125.35447 * 0.07119 * 10 9 7 23 23 H 1.08000 * 120.15324 * 180.02562 * 15 14 13 24 24 H 1.08004 * 119.87553 * 180.02562 * 16 15 14 25 25 H 1.07998 * 119.68847 * 180.25727 * 17 16 15 26 26 H 1.09002 * 109.47152 * 239.72377 * 19 18 17 27 27 H 1.09001 * 109.46980 * 119.72478 * 19 18 17 28 28 H 0.96701 * 113.99881 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6178 0.0000 4 1 3.7045 1.3465 0.0006 5 1 1.8857 2.3964 -1.2126 6 1 1.8856 2.3965 1.2124 7 6 2.0092 -1.2102 0.0005 8 1 3.0892 -1.2101 0.0010 9 6 1.3049 -2.4303 0.0005 10 6 -0.0740 -2.5980 0.0006 11 7 -0.3643 -3.9229 0.0011 12 1 -1.2615 -4.2915 0.0009 13 6 0.7946 -4.6749 0.0021 14 6 1.8836 -3.7889 0.0027 15 6 3.1852 -4.2809 0.0031 16 6 3.4006 -5.6432 0.0035 17 6 2.3269 -6.5200 0.0084 18 6 1.0322 -6.0453 0.0026 19 6 -0.1248 -7.0109 0.0025 20 8 0.3727 -8.3505 0.0025 21 1 -0.4851 0.8399 -0.0004 22 1 -0.8006 -1.7990 -0.0005 23 1 4.0229 -3.5992 0.0040 24 1 4.4097 -6.0283 0.0042 25 1 2.5061 -7.5850 0.0128 26 1 -0.7330 -6.8492 -0.8876 27 1 -0.7331 -6.8492 0.8924 28 1 -0.3185 -9.0268 0.0021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089204198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -6.259307 kcal Electronic energy + Delta-G solvation = -13828.246249 eV Core-core repulsion = 11422.963011 eV Total energy + Delta-G solvation = -2405.283238 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76590 -36.91283 -35.34308 -33.51953 -31.22786 -28.90485 -27.61998 -25.35382 -24.72663 -20.96980 -20.43781 -19.33547 -17.44700 -16.46818 -15.81104 -15.22940 -14.71196 -14.50304 -14.24365 -13.25701 -12.90082 -12.84610 -12.50778 -11.91216 -11.26486 -11.22163 -11.07711 -10.66702 -10.56224 -10.25792 -10.04420 -9.70647 -9.61269 -9.39319 -8.21982 -6.99045 -6.58658 -6.48185 -3.98406 2.19209 2.68360 3.09333 3.18464 3.24235 4.09851 4.20174 4.48037 4.55903 4.79188 5.42451 5.60063 5.60324 5.76193 5.96694 6.01242 6.35927 6.56291 6.74161 7.00066 7.17152 7.22906 7.37349 7.54806 7.71582 7.83805 7.87073 8.09748 8.32960 8.69169 9.03192 9.15303 9.23017 10.49737 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.053180 B = 0.007890 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.390153 B = 3547.978677 C = 4059.223881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.054 3.946 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.414 4.414 8 H 0.071 0.929 9 C 0.015 3.985 10 C -0.097 4.097 11 N -0.592 5.592 12 H 0.391 0.609 13 C 0.094 3.906 14 C -0.127 4.127 15 C -0.055 4.055 16 C -0.194 4.194 17 C -0.089 4.089 18 C -0.137 4.137 19 C 0.130 3.870 20 O -0.567 6.567 21 H 0.272 0.728 22 H 0.192 0.808 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -7.762 0.005 7.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.156 4.156 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.010 3.990 10 C -0.220 4.220 11 N -0.193 5.193 12 H 0.224 0.776 13 C -0.018 4.018 14 C -0.134 4.134 15 C -0.074 4.074 16 C -0.215 4.215 17 C -0.108 4.108 18 C -0.141 4.141 19 C 0.053 3.947 20 O -0.371 6.371 21 H 0.083 0.917 22 H 0.208 0.792 23 H 0.127 0.873 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.181 -7.159 0.006 7.256 hybrid contribution -0.659 0.371 0.000 0.756 sum -1.840 -6.788 0.006 7.033 Atomic orbital electron populations 1.69443 1.07186 1.27711 1.42231 1.25637 0.94831 1.00645 0.94452 0.86102 0.80369 0.81178 0.78048 1.18898 1.20389 1.20394 1.18770 0.93958 0.89103 1.42905 0.91044 1.18095 0.90704 0.89224 1.00952 1.23339 0.98146 0.81836 1.18705 1.41542 1.04966 1.06729 1.66047 0.77562 1.17898 0.87619 0.90734 1.05508 1.19438 0.91682 0.94446 1.07787 1.20423 0.95309 0.94341 0.97319 1.20562 0.97609 0.93101 1.10187 1.20279 0.90992 0.98693 1.00799 1.18385 0.94356 0.89268 1.12086 1.20700 0.94258 0.81137 0.98640 1.86491 1.37254 1.15651 1.97732 0.91705 0.79154 0.87332 0.87668 0.86613 0.93777 0.93784 0.78145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.83 10.33 55.54 0.57 -21.25 15 2 C 0.05 1.40 5.49 -17.32 -0.10 1.30 15 3 Si 0.92 19.69 29.56 -169.99 -5.02 14.67 15 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.41 -11.39 9.42 -38.02 -0.36 -11.75 15 8 H 0.07 1.90 7.84 -52.49 -0.41 1.49 15 9 C 0.02 0.42 6.10 -104.80 -0.64 -0.22 15 10 C -0.10 -2.48 10.88 -15.63 -0.17 -2.65 15 11 N -0.59 -13.01 5.99 -9.81 -0.06 -13.07 15 12 H 0.39 7.02 8.96 -40.82 -0.37 6.66 15 13 C 0.09 2.15 6.93 -83.89 -0.58 1.57 15 14 C -0.13 -3.20 6.33 -104.90 -0.66 -3.86 15 15 C -0.06 -1.25 10.09 -39.36 -0.40 -1.64 15 16 C -0.19 -3.89 10.04 -39.55 -0.40 -4.29 15 17 C -0.09 -1.76 9.36 -39.56 -0.37 -2.13 15 18 C -0.14 -2.78 5.90 -104.43 -0.62 -3.40 15 19 C 0.13 2.05 7.38 36.01 0.27 2.31 15 20 O -0.57 -8.06 12.13 -35.23 -0.43 -8.49 15 21 H 0.27 6.54 8.30 -40.82 -0.34 6.20 15 22 H 0.19 5.00 5.68 -52.49 -0.30 4.70 15 23 H 0.11 2.29 8.06 -52.49 -0.42 1.87 15 24 H 0.11 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.12 2.11 6.98 -52.49 -0.37 1.75 15 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 28 H 0.37 3.18 9.12 45.56 0.42 3.60 15 LS Contribution 246.53 15.07 3.72 3.72 Total: -1.00 -30.24 246.53 -7.10 -37.33 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -1.85 Total: 11.86 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -4.02 Total: -24.75 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.52 Total: -34.33 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.43 Total: -8.49 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.24 -7.10 -37.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.072 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds