Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31054 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48499 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47038 * 299.99755 * 3 2 1 6 6 H 1.48501 * 109.47266 * 59.99421 * 3 2 1 7 7 C 1.39737 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.40888 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.38898 * 126.92888 * 359.97174 * 9 7 2 11 11 N 1.35635 * 109.29060 * 180.02562 * 10 9 7 12 12 H 0.96997 * 124.69073 * 180.02562 * 11 10 9 13 13 C 1.38147 * 110.62285 * 0.02562 * 11 10 9 14 14 C 1.40393 * 107.88753 * 0.02562 * 13 11 10 15 15 C 1.39147 * 120.16098 * 180.02562 * 14 13 11 16 16 C 1.37917 * 119.69439 * 359.97438 * 15 14 13 17 17 C 1.38630 * 120.25051 * 359.76100 * 16 15 14 18 18 C 1.37904 * 120.62385 * 0.50281 * 17 16 15 19 19 C 1.50703 * 120.01427 * 179.75686 * 18 17 16 20 20 O 1.42898 * 109.47171 * 359.72594 * 19 18 17 21 21 H 0.96994 * 120.00740 * 0.02562 * 1 2 3 22 22 H 1.07996 * 125.35447 * 0.07119 * 10 9 7 23 23 H 1.08000 * 120.15324 * 180.02562 * 15 14 13 24 24 H 1.08004 * 119.87553 * 180.02562 * 16 15 14 25 25 H 1.07998 * 119.68847 * 180.25727 * 17 16 15 26 26 H 1.09002 * 109.47152 * 239.72377 * 19 18 17 27 27 H 1.09001 * 109.46980 * 119.72478 * 19 18 17 28 28 H 0.96701 * 113.99881 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6178 0.0000 4 1 3.7045 1.3465 0.0006 5 1 1.8857 2.3964 -1.2126 6 1 1.8856 2.3965 1.2124 7 6 2.0092 -1.2102 0.0005 8 1 3.0892 -1.2101 0.0010 9 6 1.3049 -2.4303 0.0005 10 6 -0.0740 -2.5980 0.0006 11 7 -0.3643 -3.9229 0.0011 12 1 -1.2615 -4.2915 0.0009 13 6 0.7946 -4.6749 0.0021 14 6 1.8836 -3.7889 0.0027 15 6 3.1852 -4.2809 0.0031 16 6 3.4006 -5.6432 0.0035 17 6 2.3269 -6.5200 0.0084 18 6 1.0322 -6.0453 0.0026 19 6 -0.1248 -7.0109 0.0025 20 8 0.3727 -8.3505 0.0025 21 1 -0.4851 0.8399 -0.0004 22 1 -0.8006 -1.7990 -0.0005 23 1 4.0229 -3.5992 0.0040 24 1 4.4097 -6.0283 0.0042 25 1 2.5061 -7.5850 0.0128 26 1 -0.7330 -6.8492 -0.8876 27 1 -0.7331 -6.8492 0.8924 28 1 -0.3185 -9.0268 0.0021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089204198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -26.974165 kcal Electronic energy + Delta-G solvation = -13829.144513 eV Core-core repulsion = 11422.963011 eV Total energy + Delta-G solvation = -2406.181502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.50134 -38.23768 -36.85955 -35.43201 -32.87331 -30.63635 -29.42029 -26.92459 -26.49700 -22.61564 -22.17969 -21.18012 -18.90929 -18.01979 -17.61552 -16.93357 -16.09946 -15.95415 -15.94125 -14.73423 -14.59704 -14.58068 -14.31171 -13.40132 -13.04071 -12.94369 -12.89179 -12.28614 -12.17866 -11.85690 -11.64980 -11.36335 -11.34461 -11.13155 -9.95818 -8.72092 -8.44613 -8.40357 -5.98188 0.49745 0.99174 1.39228 1.42405 1.56594 2.29203 2.30764 2.85401 3.06467 3.39369 3.63212 4.06198 4.32178 4.37420 4.46163 4.56666 4.71837 4.89408 5.03616 5.30587 5.36002 5.43228 5.70183 5.85247 5.93916 6.01377 6.22985 6.53233 6.77521 6.97212 7.11935 7.20437 7.39845 8.58756 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.053180 B = 0.007890 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.390153 B = 3547.978677 C = 4059.223881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.012 3.988 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.454 4.454 8 H 0.063 0.937 9 C -0.028 4.028 10 C -0.104 4.104 11 N -0.583 5.583 12 H 0.410 0.590 13 C 0.085 3.915 14 C -0.167 4.167 15 C -0.080 4.080 16 C -0.179 4.179 17 C -0.092 4.092 18 C -0.137 4.137 19 C 0.136 3.864 20 O -0.578 6.578 21 H 0.279 0.721 22 H 0.182 0.818 23 H 0.109 0.891 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -9.285 0.007 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.081 0.919 9 C -0.033 4.033 10 C -0.228 4.228 11 N -0.187 5.187 12 H 0.246 0.754 13 C -0.026 4.026 14 C -0.174 4.174 15 C -0.099 4.099 16 C -0.199 4.199 17 C -0.111 4.111 18 C -0.141 4.141 19 C 0.058 3.942 20 O -0.386 6.386 21 H 0.090 0.910 22 H 0.199 0.801 23 H 0.127 0.873 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.163 -8.742 0.008 8.819 hybrid contribution -0.667 0.633 -0.001 0.920 sum -1.830 -8.109 0.007 8.313 Atomic orbital electron populations 1.69504 1.08246 1.28898 1.42324 1.26475 0.95777 1.03657 0.93578 0.85041 0.78825 0.76651 0.78438 1.18878 1.19463 1.19475 1.18994 0.93854 0.90501 1.45315 0.91860 1.18545 0.91953 0.90505 1.02322 1.23151 0.97572 0.83230 1.18877 1.41316 1.05895 1.05449 1.66019 0.75363 1.18164 0.87109 0.91779 1.05535 1.19766 0.93670 0.94235 1.09716 1.20600 0.94568 0.95794 0.98924 1.20959 0.99611 0.91918 1.07453 1.20677 0.90768 0.99873 0.99763 1.18902 0.96415 0.89022 1.09781 1.20578 0.92298 0.81161 1.00130 1.86400 1.38989 1.15464 1.97757 0.91006 0.80126 0.87279 0.84290 0.84193 0.92192 0.92196 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.01 10.33 21.80 0.23 -45.79 15 2 C 0.01 0.64 5.49 85.17 0.47 1.11 15 3 Si 0.99 41.05 29.56 68.60 2.03 43.08 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 6 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 7 C -0.45 -26.04 9.42 23.28 0.22 -25.82 15 8 H 0.06 3.55 7.84 -2.91 -0.02 3.53 15 9 C -0.03 -1.59 6.10 -19.98 -0.12 -1.71 15 10 C -0.10 -5.49 10.88 84.26 0.92 -4.58 15 11 N -0.58 -25.71 5.99 -184.94 -1.11 -26.82 15 12 H 0.41 14.39 8.96 -92.71 -0.83 13.56 15 13 C 0.09 3.87 6.93 38.87 0.27 4.14 15 14 C -0.17 -8.64 6.33 -20.04 -0.13 -8.76 15 15 C -0.08 -3.64 10.09 22.41 0.23 -3.42 15 16 C -0.18 -6.83 10.04 22.29 0.22 -6.61 15 17 C -0.09 -3.39 9.36 22.28 0.21 -3.18 15 18 C -0.14 -5.26 5.90 -19.74 -0.12 -5.38 15 19 C 0.14 3.79 7.38 71.24 0.53 4.32 15 20 O -0.58 -13.94 12.13 -148.98 -1.81 -15.74 15 21 H 0.28 13.62 8.30 -92.71 -0.77 12.85 15 22 H 0.18 9.87 5.68 -2.91 -0.02 9.85 15 23 H 0.11 4.75 8.06 -2.91 -0.02 4.73 15 24 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 25 H 0.14 4.52 6.98 -2.91 -0.02 4.50 15 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.40 5.00 9.12 -74.06 -0.68 4.33 15 Total: -1.00 -66.52 246.53 1.73 -64.79 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.30 Total: 30.38 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 2.69 Total: -49.89 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -0.88 Total: -72.61 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.81 Total: -15.74 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -66.52 1.73 -64.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.813 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds