Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86799 * 119.99757 * 2 1 4 4 H 1.48503 * 109.46970 * 275.41215 * 3 2 1 5 5 H 1.48498 * 109.47527 * 35.41282 * 3 2 1 6 6 H 1.48501 * 109.47320 * 155.41539 * 3 2 1 7 7 C 1.39992 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00250 * 341.85001 * 7 2 1 9 9 C 1.41191 * 119.99746 * 161.84433 * 7 2 1 10 10 C 1.41597 * 120.39984 * 330.24126 * 9 7 2 11 11 N 1.30501 * 121.36431 * 179.72105 * 10 9 7 12 12 C 1.34032 * 121.92827 * 0.25484 * 11 10 9 13 13 C 1.40532 * 120.63734 * 179.97438 * 12 11 10 14 14 F 1.35102 * 120.14097 * 0.02562 * 13 12 11 15 15 C 1.37556 * 119.71855 * 180.02562 * 13 12 11 16 16 C 1.39260 * 120.93307 * 359.95249 * 15 13 12 17 17 C 1.36166 * 120.83985 * 0.02647 * 16 15 13 18 18 C 1.40732 * 119.79810 * 359.97438 * 17 16 15 19 19 C 1.40207 * 121.04049 * 179.97438 * 18 17 16 20 20 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.32241 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.53111 * 179.97438 * 15 13 12 23 23 H 1.08002 * 119.57723 * 180.02562 * 16 15 13 24 24 H 1.07995 * 120.10446 * 180.02562 * 17 16 15 25 25 H 1.08001 * 121.05604 * 0.04485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3751 2.1125 -1.3939 5 1 1.5013 2.6170 0.8113 6 1 3.5921 1.4100 0.5825 7 6 2.0080 -1.2124 0.0005 8 1 1.5084 -2.1243 0.2923 9 6 3.3672 -1.2429 -0.3805 10 6 3.8705 -0.3061 -1.3154 11 7 5.1244 -0.3138 -1.6768 12 6 5.9972 -1.2066 -1.1893 13 6 7.3417 -1.1905 -1.5978 14 9 7.7687 -0.2700 -2.4897 15 6 8.2211 -2.1160 -1.0857 16 6 7.7990 -3.0715 -0.1647 17 6 6.5035 -3.1145 0.2524 18 6 5.5757 -2.1834 -0.2503 19 6 4.2354 -2.2042 0.1609 20 1 -0.4850 0.8400 -0.0004 21 1 3.2037 0.4326 -1.7352 22 1 9.2536 -2.1011 -1.4020 23 1 8.5082 -3.7876 0.2236 24 1 6.1891 -3.8604 0.9673 25 1 3.8826 -2.9349 0.8737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095883878.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -10.683031 kcal Electronic energy + Delta-G solvation = -13586.673781 eV Core-core repulsion = 11057.738411 eV Total energy + Delta-G solvation = -2528.935370 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.20635 -39.46432 -36.31253 -34.07204 -32.09891 -30.30693 -28.97446 -25.83638 -23.31003 -21.97624 -21.11622 -18.61419 -17.24487 -16.41911 -16.39766 -15.23621 -15.01014 -14.70636 -13.91754 -13.63388 -13.10004 -13.01765 -12.65618 -12.13796 -11.65310 -11.59070 -11.26103 -11.16166 -10.82061 -10.51010 -10.17899 -9.67618 -9.15201 -8.53775 -7.95910 -7.39826 -7.34841 -4.81216 1.19040 1.74179 2.69977 2.91220 3.03838 3.10265 3.54813 3.67623 4.39779 4.82989 5.15531 5.16623 5.36728 5.68566 5.79910 5.92280 6.01734 6.29273 6.46741 6.58237 6.68489 6.82954 6.94303 7.06678 7.25263 7.52126 7.67927 7.87260 8.14212 8.29969 8.89918 9.63470 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.043542 B = 0.009896 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.907029 B = 2828.863017 C = 3302.017942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.409 4.409 8 H 0.102 0.898 9 C 0.040 3.960 10 C 0.068 3.932 11 N -0.455 5.455 12 C -0.010 4.010 13 C 0.155 3.845 14 F -0.138 7.138 15 C -0.218 4.218 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.012 4.012 19 C -0.226 4.226 20 H 0.294 0.706 21 H 0.141 0.859 22 H 0.122 0.878 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -1.381 0.786 6.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.436 4.436 8 H 0.120 0.880 9 C 0.034 3.966 10 C -0.111 4.111 11 N -0.162 5.162 12 C -0.130 4.130 13 C 0.135 3.865 14 F -0.117 7.117 15 C -0.239 4.239 16 C -0.106 4.106 17 C -0.165 4.165 18 C -0.015 4.015 19 C -0.252 4.252 20 H 0.105 0.895 21 H 0.158 0.842 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.856 -0.690 0.171 6.892 hybrid contribution -0.129 0.277 0.446 0.540 sum 6.727 -0.413 0.617 6.768 Atomic orbital electron populations 1.69641 1.08172 1.31320 1.30705 1.26298 0.94899 1.02095 0.90986 0.86483 0.81391 0.79537 0.80005 1.18330 1.20319 1.16752 1.19605 0.92425 0.96500 1.35110 0.88049 1.18655 0.94196 0.92534 0.91178 1.23089 0.91462 0.99715 0.96822 1.67382 1.03523 1.21309 1.23982 1.18283 0.92537 0.98840 1.03344 1.17513 0.91160 0.88245 0.89594 1.91420 1.90045 1.64629 1.65585 1.20566 0.99179 0.99521 1.04588 1.20369 0.95845 0.97625 0.96809 1.20872 0.93276 0.99897 1.02431 1.18369 0.94845 0.93725 0.94516 1.21171 0.90824 1.06407 1.06754 0.89482 0.84230 0.86022 0.86418 0.86298 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 13.93 55.55 0.77 -17.76 15 2 C 0.08 1.90 5.40 -17.33 -0.09 1.81 15 3 Si 0.90 18.96 24.51 -169.99 -4.17 14.80 15 4 H -0.26 -5.26 6.71 56.52 0.38 -4.88 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.24 -5.49 6.86 56.52 0.39 -5.10 15 7 C -0.41 -10.06 9.57 -37.80 -0.36 -10.42 15 8 H 0.10 2.57 8.06 -52.49 -0.42 2.14 15 9 C 0.04 0.96 5.11 -106.68 -0.55 0.42 15 10 C 0.07 1.64 8.32 -16.84 -0.14 1.50 15 11 N -0.46 -11.30 10.14 -10.39 -0.11 -11.41 15 12 C -0.01 -0.24 6.61 -84.64 -0.56 -0.79 15 13 C 0.15 3.27 7.34 -38.97 -0.29 2.98 15 14 F -0.14 -2.92 17.11 2.25 0.04 -2.88 15 15 C -0.22 -3.83 9.98 -39.45 -0.39 -4.22 15 16 C -0.09 -1.44 9.95 -39.95 -0.40 -1.84 15 17 C -0.15 -2.65 9.76 -39.39 -0.38 -3.03 15 18 C -0.01 -0.27 5.74 -106.82 -0.61 -0.88 15 19 C -0.23 -5.15 9.69 -38.03 -0.37 -5.52 15 20 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 21 H 0.14 3.22 4.70 -52.49 -0.25 2.98 15 22 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 23 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 24 H 0.12 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.12 2.47 8.06 -52.49 -0.42 2.04 15 LS Contribution 227.12 15.07 3.42 3.42 Total: -1.00 -26.26 227.12 -5.71 -31.97 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -1.53 Total: 1.85 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -4.14 Total: -20.00 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.67 Total: -29.17 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.17 Total: 14.80 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -26.26 -5.71 -31.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095883878.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.289 kcal (2) G-P(sol) polarization free energy of solvation -26.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds