Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86799 * 119.99757 * 2 1 4 4 H 1.48503 * 109.46970 * 275.41215 * 3 2 1 5 5 H 1.48498 * 109.47527 * 35.41282 * 3 2 1 6 6 H 1.48501 * 109.47320 * 155.41539 * 3 2 1 7 7 C 1.39992 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00250 * 341.85001 * 7 2 1 9 9 C 1.41191 * 119.99746 * 161.84433 * 7 2 1 10 10 C 1.41597 * 120.39984 * 330.24126 * 9 7 2 11 11 N 1.30501 * 121.36431 * 179.72105 * 10 9 7 12 12 C 1.34032 * 121.92827 * 0.25484 * 11 10 9 13 13 C 1.40532 * 120.63734 * 179.97438 * 12 11 10 14 14 F 1.35102 * 120.14097 * 0.02562 * 13 12 11 15 15 C 1.37556 * 119.71855 * 180.02562 * 13 12 11 16 16 C 1.39260 * 120.93307 * 359.95249 * 15 13 12 17 17 C 1.36166 * 120.83985 * 0.02647 * 16 15 13 18 18 C 1.40732 * 119.79810 * 359.97438 * 17 16 15 19 19 C 1.40207 * 121.04049 * 179.97438 * 18 17 16 20 20 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.32241 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.53111 * 179.97438 * 15 13 12 23 23 H 1.08002 * 119.57723 * 180.02562 * 16 15 13 24 24 H 1.07995 * 120.10446 * 180.02562 * 17 16 15 25 25 H 1.08001 * 121.05604 * 0.04485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3751 2.1125 -1.3939 5 1 1.5013 2.6170 0.8113 6 1 3.5921 1.4100 0.5825 7 6 2.0080 -1.2124 0.0005 8 1 1.5084 -2.1243 0.2923 9 6 3.3672 -1.2429 -0.3805 10 6 3.8705 -0.3061 -1.3154 11 7 5.1244 -0.3138 -1.6768 12 6 5.9972 -1.2066 -1.1893 13 6 7.3417 -1.1905 -1.5978 14 9 7.7687 -0.2700 -2.4897 15 6 8.2211 -2.1160 -1.0857 16 6 7.7990 -3.0715 -0.1647 17 6 6.5035 -3.1145 0.2524 18 6 5.5757 -2.1834 -0.2503 19 6 4.2354 -2.2042 0.1609 20 1 -0.4850 0.8400 -0.0004 21 1 3.2037 0.4326 -1.7352 22 1 9.2536 -2.1011 -1.4020 23 1 8.5082 -3.7876 0.2236 24 1 6.1891 -3.8604 0.9673 25 1 3.8826 -2.9349 0.8737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095883878.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -26.260090 kcal Electronic energy + Delta-G solvation = -13587.349253 eV Core-core repulsion = 11057.738411 eV Total energy + Delta-G solvation = -2529.610842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.78692 -41.16243 -37.92321 -35.81936 -33.83882 -31.96772 -30.56140 -27.54506 -24.99768 -23.66716 -22.74658 -20.30740 -18.94403 -18.10446 -17.99500 -16.92191 -16.62603 -16.28747 -15.47009 -15.35669 -14.81312 -14.75282 -14.17991 -13.86936 -13.37410 -13.15417 -12.93462 -12.76800 -12.44589 -12.08978 -11.87082 -11.40290 -10.85598 -10.33414 -9.64345 -9.11973 -8.98698 -6.64039 -0.43264 0.08983 1.01951 1.20131 1.35145 1.37696 1.91153 2.00328 2.68405 3.28203 3.40002 3.49096 3.98872 4.10365 4.24101 4.33206 4.45144 4.67780 4.84917 5.01392 5.05554 5.30874 5.35068 5.46025 5.59016 5.88011 6.00046 6.05284 6.36181 6.50945 7.10857 7.94220 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.043542 B = 0.009896 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.907029 B = 2828.863017 C = 3302.017942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.060 3.940 3 Si 0.945 3.055 4 H -0.251 1.251 5 H -0.256 1.256 6 H -0.269 1.269 7 C -0.444 4.444 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.048 3.952 11 N -0.478 5.478 12 C -0.031 4.031 13 C 0.114 3.886 14 F -0.145 7.145 15 C -0.180 4.180 16 C -0.074 4.074 17 C -0.141 4.141 18 C -0.034 4.034 19 C -0.223 4.223 20 H 0.304 0.696 21 H 0.142 0.858 22 H 0.162 0.838 23 H 0.173 0.827 24 H 0.151 0.849 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -2.590 1.401 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.181 1.181 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.098 0.902 9 C 0.020 3.980 10 C -0.128 4.128 11 N -0.185 5.185 12 C -0.152 4.152 13 C 0.094 3.906 14 F -0.124 7.124 15 C -0.200 4.200 16 C -0.091 4.091 17 C -0.160 4.160 18 C -0.036 4.036 19 C -0.249 4.249 20 H 0.116 0.884 21 H 0.159 0.841 22 H 0.179 0.821 23 H 0.191 0.809 24 H 0.169 0.831 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.895 -1.886 0.779 10.103 hybrid contribution -0.675 0.430 0.254 0.839 sum 9.220 -1.457 1.033 9.391 Atomic orbital electron populations 1.69634 1.08785 1.32460 1.32483 1.26681 0.95297 1.03571 0.90509 0.85828 0.79265 0.77752 0.80340 1.17650 1.18125 1.19400 1.19482 0.93085 0.96408 1.38266 0.90198 1.18768 0.94353 0.93339 0.91544 1.23108 0.91690 1.00477 0.97543 1.67365 1.03904 1.22514 1.24766 1.18870 0.93605 0.98964 1.03804 1.17838 0.91051 0.90220 0.91503 1.91398 1.89890 1.65142 1.65972 1.21199 1.00253 0.96751 1.01805 1.20992 0.95894 0.97336 0.94925 1.21283 0.93416 0.99086 1.02217 1.18714 0.95320 0.94741 0.94844 1.21530 0.91352 1.05823 1.06220 0.88448 0.84122 0.82087 0.80927 0.83133 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.98 13.93 21.83 0.30 -39.68 15 2 C 0.06 2.92 5.40 85.27 0.46 3.39 15 3 Si 0.95 40.09 24.51 68.60 1.68 41.77 15 4 H -0.25 -10.25 6.71 99.48 0.67 -9.58 15 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.27 -12.41 6.86 99.48 0.68 -11.73 15 7 C -0.44 -22.94 9.57 23.42 0.22 -22.71 15 8 H 0.08 4.31 8.06 -2.91 -0.02 4.29 15 9 C 0.02 1.25 5.11 -21.20 -0.11 1.14 15 10 C 0.05 2.42 8.32 85.72 0.71 3.13 15 11 N -0.48 -24.13 10.14 -186.80 -1.89 -26.02 15 12 C -0.03 -1.45 6.61 40.27 0.27 -1.18 15 13 C 0.11 4.53 7.34 22.67 0.17 4.69 15 14 F -0.15 -5.93 17.11 44.97 0.77 -5.16 15 15 C -0.18 -5.34 9.98 22.35 0.22 -5.11 15 16 C -0.07 -1.92 9.95 22.03 0.22 -1.70 15 17 C -0.14 -4.47 9.76 22.40 0.22 -4.25 15 18 C -0.03 -1.45 5.74 -21.29 -0.12 -1.57 15 19 C -0.22 -10.13 9.69 23.27 0.23 -9.91 15 20 H 0.30 13.29 8.30 -92.71 -0.77 12.52 15 21 H 0.14 6.77 4.70 -2.91 -0.01 6.76 15 22 H 0.16 3.59 8.06 -2.91 -0.02 3.56 15 23 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15 24 H 0.15 3.83 8.06 -2.91 -0.02 3.81 15 25 H 0.13 5.50 8.06 -2.91 -0.02 5.48 15 Total: -1.00 -58.97 227.12 4.50 -54.46 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.16 Total: 8.72 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 2.49 Total: -34.09 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -1.59 Total: -65.70 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.77 Total: -5.16 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.77 kcal Total: -58.97 4.50 -54.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095883878.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.203 kcal (2) G-P(sol) polarization free energy of solvation -58.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds