Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47108 * 264.98850 * 3 2 1 5 5 H 1.48500 * 109.46972 * 24.98817 * 3 2 1 6 6 H 1.48496 * 109.47084 * 144.98928 * 3 2 1 7 7 C 1.37876 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00030 * 189.66725 * 7 2 1 9 9 C 1.50706 * 120.00006 * 9.66330 * 7 2 1 10 10 H 1.09002 * 109.46993 * 305.46325 * 9 7 2 11 11 N 1.46898 * 109.47026 * 65.46568 * 9 7 2 12 12 C 1.50701 * 109.47146 * 185.46854 * 9 7 2 13 13 C 1.38475 * 122.55326 * 264.99984 * 12 9 7 14 14 C 1.33344 * 114.92742 * 180.22717 * 13 12 9 15 15 S 1.75888 * 109.62162 * 359.63191 * 14 13 12 16 16 C 1.33496 * 122.56064 * 84.97754 * 12 9 7 17 17 Cl 1.73597 * 125.20752 * 359.97438 * 16 12 9 18 18 H 0.96997 * 120.00434 * 0.02562 * 1 2 3 19 19 H 1.00903 * 110.99853 * 295.95176 * 11 9 7 20 20 H 1.00899 * 110.99700 * 59.90006 * 11 9 7 21 21 H 1.08000 * 122.53779 * 359.95471 * 13 12 9 22 22 H 1.08000 * 125.19055 * 179.72844 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4897 1.4731 0.8032 7 6 2.0046 -1.1940 0.0005 8 1 3.0730 -1.2006 0.1576 9 6 1.2671 -2.4900 -0.2180 10 1 0.4549 -2.5722 0.5044 11 7 0.7161 -2.5164 -1.5795 12 6 2.2178 -3.6454 -0.0383 13 6 2.8759 -4.2411 -1.1011 14 6 3.6775 -5.2537 -0.7695 15 16 3.6354 -5.4944 0.9723 16 6 2.4901 -4.1725 1.1576 17 17 1.8178 -3.6346 2.6650 18 1 -0.4851 0.8400 -0.0004 19 1 0.0261 -1.7909 -1.7044 20 1 1.4498 -2.4400 -2.2679 21 1 2.7462 -3.9132 -2.1220 22 1 4.2645 -5.8362 -1.4642 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104486607.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = 2.662412 kcal Electronic energy + Delta-G solvation = -10548.074443 eV Core-core repulsion = 8447.665007 eV Total energy + Delta-G solvation = -2100.409436 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.002 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.46446 -37.33487 -35.74458 -33.07812 -30.29206 -27.74682 -25.15992 -23.17563 -19.67015 -18.70238 -18.35163 -17.25528 -16.33592 -15.03899 -14.83087 -14.59276 -14.44311 -14.15442 -13.46882 -13.08934 -12.80319 -12.72433 -12.37942 -12.05100 -11.98628 -11.82201 -11.19969 -10.64112 -9.46525 -9.30220 -9.07642 -8.11588 -6.32088 0.05488 0.34740 1.00257 1.37181 1.39508 1.48038 1.58192 1.90743 2.40639 3.08205 4.23951 4.45071 4.55675 4.75247 5.08553 5.24936 5.53956 5.66738 5.79243 6.07916 6.68776 6.82036 7.10042 7.39058 8.85692 Molecular weight = 217.00amu Principal moments of inertia in cm(-1) A = 0.035820 B = 0.011054 C = 0.010036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.506301 B = 2532.307304 C = 2789.232458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.043 0.957 9 C 0.261 3.739 10 H 0.024 0.976 11 N -0.839 5.839 12 C -0.059 4.059 13 C -0.128 4.128 14 C -0.193 4.193 15 S 0.134 5.866 16 C -0.185 4.185 17 Cl -0.032 7.032 18 H 0.266 0.734 19 H 0.338 0.662 20 H 0.324 0.676 21 H 0.153 0.847 22 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -8.530 -0.743 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.061 0.939 9 C 0.149 3.851 10 H 0.042 0.958 11 N -0.366 5.366 12 C -0.073 4.073 13 C -0.159 4.159 14 C -0.328 4.328 15 S 0.395 5.605 16 C -0.327 4.327 17 Cl -0.004 7.004 18 H 0.075 0.925 19 H 0.150 0.850 20 H 0.134 0.866 21 H 0.170 0.830 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.044 -10.130 0.599 12.353 hybrid contribution -0.258 3.166 -0.619 3.236 sum 6.786 -6.964 -0.019 9.724 Atomic orbital electron populations 1.70009 1.06912 1.27809 1.50329 1.25624 0.95504 1.01950 0.94102 0.85701 0.78561 0.79627 0.78522 1.19561 1.21058 1.20117 1.21792 0.94041 0.92259 1.50689 0.93897 1.17513 0.90625 0.88131 0.88823 0.95838 1.59451 1.18154 1.54313 1.04711 1.19499 0.98691 0.97513 0.91577 1.19977 0.98208 0.97337 1.00350 1.25994 1.05772 1.03462 0.97615 1.83643 1.42072 1.30804 1.04025 1.25059 1.09826 1.06773 0.91075 1.98302 1.83975 1.89444 1.28653 0.92508 0.85014 0.86570 0.82952 0.77688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.91 12.31 21.45 0.26 -50.65 14 2 C 0.03 1.57 5.29 84.65 0.45 2.02 14 3 Si 0.95 42.92 29.55 68.60 2.03 44.95 14 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 14 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 14 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 14 7 C -0.55 -29.43 8.66 25.60 0.22 -29.21 14 8 H 0.04 2.36 7.76 -2.91 -0.02 2.34 14 9 C 0.26 13.07 2.58 43.43 0.11 13.18 14 10 H 0.02 1.36 7.58 -2.39 -0.02 1.34 14 11 N -0.84 -38.66 8.88 -174.95 -1.55 -40.22 14 12 C -0.06 -2.52 4.90 -20.88 -0.10 -2.62 14 13 C -0.13 -4.47 9.39 21.22 0.20 -4.27 14 14 C -0.19 -5.32 11.22 66.71 0.75 -4.57 14 15 S 0.13 3.98 23.34 -56.49 -1.32 2.67 14 16 C -0.18 -7.40 7.07 66.75 0.47 -6.93 14 17 Cl -0.03 -1.31 28.40 -2.72 -0.08 -1.39 14 18 H 0.27 14.15 8.31 -92.71 -0.77 13.38 14 19 H 0.34 16.73 7.90 -89.69 -0.71 16.02 14 20 H 0.32 13.55 7.52 -89.69 -0.67 12.88 14 21 H 0.15 4.93 6.80 -2.91 -0.02 4.91 14 22 H 0.21 3.78 8.06 -2.91 -0.02 3.75 14 Total: -1.00 -58.58 226.84 1.32 -57.25 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.12 Total: 19.80 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.10 Total: -32.41 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -1.29 Total: -90.86 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.32 Total: 2.67 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -58.58 1.32 -57.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104486607.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.916 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds