Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 11 11 N 1.46899 * 109.47101 * 59.99938 * 9 7 2 12 12 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.33993 * 126.90349 * 264.68362 * 12 9 7 14 14 O 1.34450 * 110.15675 * 179.88647 * 13 12 9 15 15 C 1.34815 * 110.88253 * 0.39456 * 14 13 12 16 16 C 1.38942 * 133.48981 * 179.81973 * 15 14 13 17 17 C 1.37846 * 119.81610 * 180.02562 * 16 15 14 18 18 C 1.38743 * 120.68550 * 359.94938 * 17 16 15 19 19 C 1.36737 * 120.41825 * 0.02562 * 18 17 16 20 20 C 1.39407 * 119.71736 * 0.02562 * 19 18 17 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.00897 * 110.99782 * 60.00139 * 11 9 7 23 23 H 1.00900 * 110.99667 * 183.96025 * 11 9 7 24 24 H 1.08004 * 124.92581 * 0.02562 * 13 12 9 25 25 H 1.08004 * 120.09377 * 0.02562 * 16 15 14 26 26 H 1.08001 * 119.66114 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.79449 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.14216 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4069 -2.5762 -1.2015 12 6 2.2303 -3.6446 -0.0015 13 6 2.6785 -4.3202 -1.0683 14 8 3.5440 -5.2740 -0.6825 15 6 3.6956 -5.2721 0.6571 16 6 4.4520 -6.0387 1.5349 17 6 4.3925 -5.7888 2.8892 18 6 3.5845 -4.7771 3.3877 19 6 2.8326 -4.0108 2.5408 20 6 2.8790 -4.2494 1.1680 21 1 -0.4849 0.8401 0.0004 22 1 0.9653 -2.5242 -2.0403 23 1 -0.1571 -3.4128 -1.1937 24 1 2.3884 -4.1253 -2.0902 25 1 5.0849 -6.8282 1.1573 26 1 4.9812 -6.3865 3.5694 27 1 3.5491 -4.5935 4.4515 28 1 2.2055 -3.2241 2.9336 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104503308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = 29.015723 kcal Electronic energy + Delta-G solvation = -13961.459595 eV Core-core repulsion = 11557.705997 eV Total energy + Delta-G solvation = -2403.753598 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.84196 -37.41446 -35.15911 -32.06095 -30.84961 -29.90206 -28.29478 -26.11763 -23.00832 -22.43346 -21.74335 -19.13966 -16.80751 -16.57064 -16.27493 -15.43501 -15.31224 -14.52149 -14.12747 -13.67078 -13.39052 -12.80135 -12.54813 -12.14961 -11.88088 -11.59982 -11.10169 -10.85027 -10.73579 -10.45484 -10.02443 -9.60055 -8.96933 -8.45395 -8.20277 -7.54385 -7.18363 -5.90057 -4.04943 1.37430 1.77183 3.04557 3.31597 3.34420 3.40118 3.44979 4.15555 4.48297 5.03113 5.13608 5.25371 5.32694 5.56406 5.66008 5.84082 5.95693 6.18168 6.29318 6.37879 6.60759 6.73672 6.87092 7.08165 7.09863 7.39570 7.73243 7.89357 8.16887 8.58109 8.94703 9.10619 9.63986 11.14134 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.009095 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.223608 B = 3077.885079 C = 3444.007443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.281 3.719 10 H 0.049 0.951 11 N -0.809 5.809 12 C -0.148 4.148 13 C -0.045 4.045 14 O -0.204 6.204 15 C 0.044 3.956 16 C -0.119 4.119 17 C -0.103 4.103 18 C -0.151 4.151 19 C -0.054 4.054 20 C -0.117 4.117 21 H 0.256 0.744 22 H 0.317 0.683 23 H 0.300 0.700 24 H 0.197 0.803 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -9.568 2.867 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.172 3.828 10 H 0.067 0.933 11 N -0.335 5.335 12 C -0.151 4.151 13 C -0.108 4.108 14 O -0.106 6.106 15 C -0.004 4.004 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.170 4.170 19 C -0.072 4.072 20 C -0.119 4.119 21 H 0.066 0.934 22 H 0.128 0.872 23 H 0.110 0.890 24 H 0.214 0.786 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.247 -8.937 2.953 10.776 hybrid contribution 0.999 0.214 -0.283 1.060 sum 6.246 -8.723 2.669 11.055 Atomic orbital electron populations 1.70116 1.05652 1.25655 1.46766 1.24942 0.94646 0.98544 0.94166 0.86686 0.80290 0.84267 0.77570 1.19903 1.20984 1.21023 1.20839 0.92270 0.89303 1.54328 0.92856 1.17666 0.86659 0.87593 0.90921 0.93322 1.59180 1.27907 1.42196 1.04182 1.23318 1.02078 0.99837 0.89914 1.23452 0.95641 0.92008 0.99746 1.83911 1.55493 1.50365 1.20875 1.19737 0.99864 0.98660 0.82094 1.19783 1.01505 1.00990 0.91467 1.20786 0.99358 0.98272 0.93659 1.20697 0.99164 0.97461 0.99646 1.20446 0.97571 0.98093 0.91061 1.20044 0.99721 0.97279 0.94820 0.93449 0.87161 0.88981 0.78639 0.85881 0.85550 0.85908 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.40 12.77 55.43 0.71 -23.69 15 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 15 3 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 7 C -0.53 -14.49 8.71 -34.44 -0.30 -14.79 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.28 6.94 3.14 -70.01 -0.22 6.72 15 10 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 11 N -0.81 -18.48 8.30 -6.65 -0.06 -18.54 15 12 C -0.15 -3.21 5.40 -102.67 -0.55 -3.77 15 13 C -0.05 -0.87 11.27 29.24 0.33 -0.54 15 14 O -0.20 -3.91 10.58 3.89 0.04 -3.87 15 15 C 0.04 0.84 7.42 -38.47 -0.29 0.55 15 16 C -0.12 -1.83 10.07 -39.46 -0.40 -2.23 15 17 C -0.10 -1.41 10.01 -39.54 -0.40 -1.81 15 18 C -0.15 -2.26 9.98 -39.94 -0.40 -2.66 15 19 C -0.05 -0.98 10.05 -39.69 -0.40 -1.38 15 20 C -0.12 -2.40 6.38 -105.16 -0.67 -3.07 15 21 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 22 H 0.32 6.75 8.00 -39.29 -0.31 6.44 15 23 H 0.30 6.09 9.06 -39.29 -0.36 5.73 15 24 H 0.20 3.16 7.34 -52.48 -0.39 2.77 15 25 H 0.12 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.12 1.47 8.06 -52.48 -0.42 1.04 15 28 H 0.13 2.38 8.06 -52.49 -0.42 1.96 15 LS Contribution 251.16 15.07 3.78 3.78 Total: -1.00 -30.51 251.16 -6.64 -37.15 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.71 Total: 9.64 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.39 Total: -20.75 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.65 Total: -42.23 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.51 -6.64 -37.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.166 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds