Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 11 11 N 1.46899 * 109.47101 * 59.99938 * 9 7 2 12 12 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.33993 * 126.90349 * 264.68362 * 12 9 7 14 14 O 1.34450 * 110.15675 * 179.88647 * 13 12 9 15 15 C 1.34815 * 110.88253 * 0.39456 * 14 13 12 16 16 C 1.38942 * 133.48981 * 179.81973 * 15 14 13 17 17 C 1.37846 * 119.81610 * 180.02562 * 16 15 14 18 18 C 1.38743 * 120.68550 * 359.94938 * 17 16 15 19 19 C 1.36737 * 120.41825 * 0.02562 * 18 17 16 20 20 C 1.39407 * 119.71736 * 0.02562 * 19 18 17 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.00897 * 110.99782 * 60.00139 * 11 9 7 23 23 H 1.00900 * 110.99667 * 183.96025 * 11 9 7 24 24 H 1.08004 * 124.92581 * 0.02562 * 13 12 9 25 25 H 1.08004 * 120.09377 * 0.02562 * 16 15 14 26 26 H 1.08001 * 119.66114 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.79449 * 180.02562 * 18 17 16 28 28 H 1.08002 * 120.14216 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4069 -2.5762 -1.2015 12 6 2.2303 -3.6446 -0.0015 13 6 2.6785 -4.3202 -1.0683 14 8 3.5440 -5.2740 -0.6825 15 6 3.6956 -5.2721 0.6571 16 6 4.4520 -6.0387 1.5349 17 6 4.3925 -5.7888 2.8892 18 6 3.5845 -4.7771 3.3877 19 6 2.8326 -4.0108 2.5408 20 6 2.8790 -4.2494 1.1680 21 1 -0.4849 0.8401 0.0004 22 1 0.9653 -2.5242 -2.0403 23 1 -0.1571 -3.4128 -1.1937 24 1 2.3884 -4.1253 -2.0902 25 1 5.0849 -6.8282 1.1573 26 1 4.9812 -6.3865 3.5694 27 1 3.5491 -4.5935 4.4515 28 1 2.2055 -3.2241 2.9336 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104503308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = 8.551627 kcal Electronic energy + Delta-G solvation = -13962.346985 eV Core-core repulsion = 11557.705997 eV Total energy + Delta-G solvation = -2404.640988 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.27705 -38.69502 -36.99580 -33.99305 -32.43284 -31.23404 -29.74713 -28.15513 -24.66037 -23.99904 -23.05860 -20.71063 -18.58916 -18.15531 -17.82088 -16.94118 -16.61611 -16.44096 -15.98746 -15.01479 -14.75831 -14.52654 -14.22918 -13.86941 -13.17737 -13.10011 -12.82525 -12.68342 -12.55752 -11.94974 -11.80020 -11.52251 -10.67898 -10.53241 -9.53111 -9.11650 -8.90217 -8.01055 -6.23151 0.05537 0.46252 1.39800 1.41021 1.50652 1.57671 1.95495 2.45518 2.84422 3.21216 3.68495 3.81586 4.12982 4.19854 4.34561 4.50012 4.57511 4.64828 4.75764 4.97097 5.31493 5.41202 5.44326 5.54924 5.63061 5.71779 5.82345 6.15549 6.28751 6.62240 7.05211 7.21757 7.49462 9.02137 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034423 B = 0.009095 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.223608 B = 3077.885079 C = 3444.007443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.038 0.962 9 C 0.293 3.707 10 H 0.008 0.992 11 N -0.818 5.818 12 C -0.188 4.188 13 C -0.027 4.027 14 O -0.205 6.205 15 C 0.022 3.978 16 C -0.116 4.116 17 C -0.088 4.088 18 C -0.136 4.136 19 C -0.089 4.089 20 C -0.152 4.152 21 H 0.257 0.743 22 H 0.326 0.674 23 H 0.314 0.686 24 H 0.222 0.778 25 H 0.157 0.843 26 H 0.177 0.823 27 H 0.157 0.843 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 -10.803 3.504 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.056 0.944 9 C 0.183 3.817 10 H 0.026 0.974 11 N -0.345 5.345 12 C -0.192 4.192 13 C -0.091 4.091 14 O -0.107 6.107 15 C -0.025 4.025 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.154 4.154 19 C -0.107 4.107 20 C -0.154 4.154 21 H 0.066 0.934 22 H 0.138 0.862 23 H 0.126 0.874 24 H 0.239 0.761 25 H 0.175 0.825 26 H 0.194 0.806 27 H 0.174 0.826 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.133 -10.184 3.593 12.942 hybrid contribution 0.457 0.492 -0.388 0.776 sum 7.590 -9.693 3.205 12.721 Atomic orbital electron populations 1.70228 1.06928 1.26447 1.47806 1.25641 0.95434 1.01650 0.93856 0.85689 0.78810 0.80314 0.77786 1.19964 1.20325 1.20430 1.21053 0.91716 0.91058 1.54128 0.94351 1.17158 0.86634 0.88034 0.89903 0.97407 1.58950 1.28225 1.43333 1.03971 1.23025 1.03557 1.00578 0.92043 1.23801 0.94295 0.90815 1.00161 1.83903 1.55305 1.50101 1.21407 1.20235 1.00889 0.99382 0.82021 1.20354 1.00593 1.00774 0.91662 1.21385 0.98153 0.97326 0.93705 1.21137 0.97222 0.96220 1.00847 1.20552 0.99524 0.99494 0.91106 1.20290 1.01005 0.98604 0.95496 0.93395 0.86153 0.87430 0.76134 0.82542 0.80561 0.82572 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.74 12.77 21.45 0.27 -51.47 15 2 C 0.04 2.14 5.39 84.65 0.46 2.60 15 3 Si 0.95 44.42 29.54 68.60 2.03 46.45 15 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 7 C -0.54 -30.65 8.71 25.60 0.22 -30.42 15 8 H 0.04 2.23 7.74 -2.91 -0.02 2.21 15 9 C 0.29 15.11 3.14 43.42 0.14 15.24 15 10 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 11 N -0.82 -38.34 8.30 -174.95 -1.45 -39.79 15 12 C -0.19 -8.46 5.40 -18.60 -0.10 -8.56 15 13 C -0.03 -1.04 11.27 66.85 0.75 -0.29 15 14 O -0.20 -7.67 10.58 -9.00 -0.10 -7.77 15 15 C 0.02 0.80 7.42 22.99 0.17 0.97 15 16 C -0.12 -3.16 10.07 22.35 0.23 -2.94 15 17 C -0.09 -2.03 10.01 22.30 0.22 -1.81 15 18 C -0.14 -3.72 9.98 22.04 0.22 -3.50 15 19 C -0.09 -3.31 10.05 22.20 0.22 -3.08 15 20 C -0.15 -6.39 6.38 -20.21 -0.13 -6.52 15 21 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 22 H 0.33 14.06 8.00 -89.70 -0.72 13.34 15 23 H 0.31 13.07 9.06 -89.69 -0.81 12.26 15 24 H 0.22 6.96 7.34 -2.91 -0.02 6.94 15 25 H 0.16 3.20 8.06 -2.91 -0.02 3.18 15 26 H 0.18 2.37 8.06 -2.91 -0.02 2.35 15 27 H 0.16 3.15 8.06 -2.91 -0.02 3.13 15 28 H 0.11 4.40 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -67.89 251.16 2.82 -65.08 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.34 Total: 25.81 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 2.40 Total: -38.31 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.18 Total: -91.26 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.10 Total: -7.77 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.89 2.82 -65.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.630 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds