Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30480 * 1 3 3 Si 1.86798 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00025 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99610 * 3 2 1 7 7 C 1.40455 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.41650 * 120.00197 * 359.73037 * 7 2 1 10 10 O 1.21748 * 120.00005 * 359.97438 * 9 7 2 11 11 C 1.48036 * 120.00077 * 180.02562 * 9 7 2 12 12 N 1.30809 * 126.42449 * 359.68166 * 11 9 7 13 13 O 1.41333 * 109.56604 * 179.85071 * 12 11 9 14 14 C 1.34867 * 109.55732 * 0.43092 * 13 12 11 15 15 C 1.39011 * 133.19102 * 179.77012 * 14 13 12 16 16 C 1.37796 * 119.94070 * 179.97438 * 15 14 13 17 17 C 1.38760 * 120.57951 * 0.02721 * 16 15 14 18 18 C 1.37708 * 120.33227 * 359.95380 * 17 16 15 19 19 C 1.39484 * 119.69992 * 0.04323 * 18 17 16 20 20 H 0.97000 * 120.00248 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.02915 * 0.02562 * 15 14 13 22 22 H 1.07995 * 119.71371 * 180.02562 * 16 15 14 23 23 H 1.07999 * 119.83552 * 179.97438 * 17 16 15 24 24 H 1.08003 * 120.15204 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6177 0.0000 4 1 3.0926 1.6964 -1.2125 5 1 1.2738 2.7464 0.0006 6 1 3.0926 1.6963 1.2126 7 6 2.0070 -1.2164 -0.0005 8 1 3.0871 -1.2164 -0.0001 9 6 1.2988 -2.4431 0.0047 10 8 0.0813 -2.4431 0.0101 11 6 2.0389 -3.7252 0.0047 12 7 3.3387 -3.8716 -0.0057 13 8 3.6601 -5.2479 0.0018 14 6 2.5251 -5.9765 0.0077 15 6 2.2720 -7.3433 0.0119 16 6 0.9727 -7.8021 0.0183 17 6 -0.0907 -6.9107 0.0200 18 6 0.1399 -5.5531 0.0163 19 6 1.4501 -5.0746 0.0099 20 1 -0.4850 0.8400 -0.0004 21 1 3.0930 -8.0451 0.0111 22 1 0.7802 -8.8648 0.0220 23 1 -1.1043 -7.2835 0.0246 24 1 -0.6900 -4.8618 0.0180 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201500515.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = -3.335609 kcal Electronic energy + Delta-G solvation = -13519.980595 eV Core-core repulsion = 10978.991043 eV Total energy + Delta-G solvation = -2540.989552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.63779 -38.94316 -38.59438 -35.07637 -34.54202 -31.50069 -31.02302 -29.31776 -25.32114 -23.98323 -23.55479 -21.23668 -19.11264 -18.15792 -17.99620 -17.03127 -16.92634 -16.35890 -15.61519 -15.20434 -14.83552 -14.59526 -14.48714 -13.51745 -13.23554 -13.14658 -12.86406 -12.75811 -12.47003 -12.10013 -12.06112 -11.93447 -11.10208 -10.05538 -9.94553 -9.58063 -8.60932 -7.36450 -0.46091 0.25696 0.68421 1.34474 1.39530 1.50580 1.64249 2.14117 2.20636 2.65131 3.18747 3.33177 3.38845 3.65967 4.09591 4.26107 4.34140 4.49672 4.72997 4.95314 5.00548 5.17965 5.34714 5.41513 5.72759 5.75020 6.15535 6.42556 6.44627 7.86105 8.22457 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.008166 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.468774 B = 3427.886703 C = 3934.506743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.255 1.255 6 H -0.253 1.253 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.382 3.618 10 O -0.561 6.561 11 C 0.087 3.913 12 N -0.297 5.297 13 O -0.115 6.115 14 C 0.051 3.949 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.142 4.142 18 C -0.053 4.053 19 C -0.209 4.209 20 H 0.294 0.706 21 H 0.170 0.830 22 H 0.194 0.806 23 H 0.170 0.830 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -10.365 0.041 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.197 4.197 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.179 1.179 6 H -0.177 1.177 7 C -0.541 4.541 8 H 0.105 0.895 9 C 0.280 3.720 10 O -0.451 6.451 11 C -0.092 4.092 12 N -0.045 5.045 13 O -0.126 6.126 14 C -0.002 4.002 15 C -0.147 4.147 16 C -0.064 4.064 17 C -0.160 4.160 18 C -0.073 4.073 19 C -0.212 4.212 20 H 0.105 0.895 21 H 0.188 0.812 22 H 0.211 0.789 23 H 0.188 0.812 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.504 -9.823 0.031 9.937 hybrid contribution -0.237 0.682 0.007 0.722 sum 1.267 -9.141 0.038 9.228 Atomic orbital electron populations 1.69973 1.09725 1.31191 1.28106 1.27297 0.95753 1.05348 0.91271 0.84981 0.78627 0.73701 0.80712 1.17684 1.17879 1.17707 1.21386 0.96059 0.91790 1.44908 0.89481 1.17898 0.88024 0.84478 0.81556 1.90469 1.15070 1.87361 1.52243 1.26777 0.91935 0.98841 0.91676 1.80104 1.14737 0.88830 1.20829 1.88980 1.27706 1.14227 1.81683 1.20969 0.85246 0.95398 0.98616 1.20566 1.00160 0.88157 1.05848 1.21713 0.89547 1.02322 0.92845 1.21546 1.02094 0.90506 1.01805 1.21058 0.93809 0.97624 0.94840 1.21041 0.97461 0.89711 1.13036 0.89510 0.81223 0.78913 0.81227 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -43.00 11.73 21.91 0.26 -42.74 14 2 C 0.03 1.34 5.50 85.43 0.47 1.81 14 3 Si 1.00 38.75 29.56 68.60 2.03 40.78 14 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 14 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 6 H -0.25 -9.41 7.11 99.48 0.71 -8.71 14 7 C -0.51 -29.55 9.14 23.65 0.22 -29.33 14 8 H 0.09 4.81 7.69 -2.91 -0.02 4.79 14 9 C 0.38 23.14 6.95 25.71 0.18 23.32 14 10 O -0.56 -36.34 14.61 -4.50 -0.07 -36.40 14 11 C 0.09 4.70 7.23 44.26 0.32 5.02 14 12 N -0.30 -15.31 12.54 -44.52 -0.56 -15.87 14 13 O -0.12 -5.20 12.05 29.44 0.35 -4.84 14 14 C 0.05 2.02 7.47 22.96 0.17 2.19 14 15 C -0.13 -3.40 10.06 22.35 0.22 -3.18 14 16 C -0.05 -0.94 10.02 22.29 0.22 -0.72 14 17 C -0.14 -3.66 10.03 22.27 0.22 -3.44 14 18 C -0.05 -2.06 9.84 22.44 0.22 -1.84 14 19 C -0.21 -9.56 6.24 -20.11 -0.13 -9.69 14 20 H 0.29 14.52 8.29 -92.71 -0.77 13.75 14 21 H 0.17 3.20 8.06 -2.91 -0.02 3.17 14 22 H 0.19 1.83 8.06 -2.91 -0.02 1.81 14 23 H 0.17 3.01 8.06 -2.91 -0.02 2.98 14 24 H 0.12 5.12 7.38 -2.91 -0.02 5.10 14 Total: -1.00 -74.38 231.83 5.38 -69.00 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.24 Total: 5.93 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 2.12 Total: -15.85 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.30 Total: -58.61 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: 0.29 Total: -41.25 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -74.38 5.38 -69.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201500515.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.663 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds