Wall clock time and date at job start Mon Mar 30 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30596 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48495 * 109.47080 * 274.98927 * 3 2 1 5 5 H 1.48504 * 109.46765 * 34.98899 * 3 2 1 6 6 H 1.48504 * 109.47044 * 154.98338 * 3 2 1 7 7 C 1.40210 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00550 * 186.11445 * 7 2 1 9 9 C 1.41261 * 119.99964 * 6.12022 * 7 2 1 10 10 N 1.30625 * 123.22735 * 174.10135 * 9 7 2 11 11 C 1.47587 * 108.34110 * 180.60325 * 10 9 7 12 12 H 1.09002 * 110.90586 * 256.78572 * 11 10 9 13 13 C 1.50703 * 110.93750 * 133.20319 * 11 10 9 14 14 C 1.38231 * 119.99566 * 324.07061 * 13 11 10 15 15 C 1.38236 * 119.99732 * 179.76487 * 14 13 11 16 16 C 1.38240 * 119.99831 * 0.48818 * 15 14 13 17 17 C 1.38228 * 119.99809 * 359.78606 * 16 15 14 18 18 C 1.38230 * 120.00087 * 144.34514 * 13 11 10 19 19 C 1.54787 * 102.10517 * 14.98866 * 11 10 9 20 20 O 1.35196 * 123.22227 * 354.07327 * 9 7 2 21 21 H 0.96997 * 120.00060 * 359.97438 * 1 2 3 22 22 H 1.08005 * 120.00525 * 359.97438 * 14 13 11 23 23 H 1.08006 * 120.00143 * 180.25375 * 15 14 13 24 24 H 1.08001 * 119.99456 * 179.76804 * 16 15 14 25 25 H 1.08000 * 119.99733 * 179.97438 * 17 16 15 26 26 H 1.07998 * 119.99770 * 0.02562 * 18 13 11 27 27 H 1.09001 * 111.01904 * 94.38478 * 19 11 10 28 28 H 1.09001 * 111.01956 * 218.24010 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.3820 2.1074 -1.3947 5 1 1.4940 2.6200 0.8029 6 1 3.5862 1.4122 0.5921 7 6 2.0071 -1.2142 -0.0005 8 1 3.0825 -1.2169 0.0991 9 6 1.3069 -2.4341 -0.1315 10 7 1.9012 -3.5911 -0.2518 11 6 0.8650 -4.6342 -0.3800 12 1 0.7453 -5.1806 0.5555 13 6 1.1858 -5.5756 -1.5123 14 6 1.7819 -5.0948 -2.6630 15 6 2.0806 -5.9591 -3.6997 16 6 1.7739 -7.3026 -3.5895 17 6 1.1726 -7.7823 -2.4411 18 6 0.8787 -6.9189 -1.4023 19 6 -0.3989 -3.7990 -0.6975 20 8 -0.0425 -2.5160 -0.1438 21 1 -0.4850 0.8400 0.0004 22 1 2.0174 -4.0444 -2.7509 23 1 2.5501 -5.5842 -4.5972 24 1 2.0039 -7.9771 -4.4010 25 1 0.9326 -8.8318 -2.3552 26 1 0.4085 -7.2936 -0.5052 27 1 -0.5614 -3.7291 -1.7730 28 1 -1.2756 -4.2111 -0.1977 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211738556.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:45 Heat of formation + Delta-G solvation = 2.472640 kcal Electronic energy + Delta-G solvation = -13840.446239 eV Core-core repulsion = 11435.541647 eV Total energy + Delta-G solvation = -2404.904592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60273 -38.19053 -33.61305 -32.51867 -30.59533 -30.28549 -28.22080 -25.64326 -22.88342 -22.04434 -20.44519 -19.46937 -17.29773 -16.39632 -15.33497 -15.14664 -14.69706 -14.09565 -14.04127 -13.44277 -12.93564 -12.78118 -12.36232 -12.01571 -11.46785 -11.27760 -11.13205 -10.84429 -10.58141 -10.48199 -10.33018 -10.09123 -9.22523 -8.49944 -8.38112 -8.07896 -7.56644 -6.78940 -4.79104 1.81402 1.86981 2.95676 3.07530 3.13468 3.85853 3.92170 4.24715 5.02788 5.14654 5.29629 5.36692 5.45774 5.66468 5.83793 5.95063 6.04226 6.06572 6.19122 6.40061 6.49315 6.68070 6.79269 6.88422 6.98602 7.11679 7.35436 7.47265 7.76181 8.25088 8.58865 8.81999 9.89421 10.22188 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.054871 B = 0.007243 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.167024 B = 3864.962935 C = 4122.857291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.078 3.922 3 Si 0.924 3.076 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.448 4.448 8 H 0.103 0.897 9 C 0.411 3.589 10 N -0.686 5.686 11 C 0.075 3.925 12 H 0.062 0.938 13 C -0.045 4.045 14 C -0.089 4.089 15 C -0.127 4.127 16 C -0.137 4.137 17 C -0.128 4.128 18 C -0.125 4.125 19 C 0.022 3.978 20 O -0.313 6.313 21 H 0.281 0.719 22 H 0.125 0.875 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -6.364 -4.365 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.145 4.145 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.486 4.486 8 H 0.121 0.879 9 C 0.215 3.785 10 N -0.439 5.439 11 C -0.037 4.037 12 H 0.079 0.921 13 C -0.046 4.046 14 C -0.107 4.107 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.056 4.056 20 O -0.217 6.217 21 H 0.092 0.908 22 H 0.143 0.857 23 H 0.133 0.867 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.075 0.925 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.152 -6.512 -4.307 7.809 hybrid contribution -0.571 0.618 -0.055 0.843 sum -0.723 -5.894 -4.362 7.368 Atomic orbital electron populations 1.69762 1.07525 1.29351 1.33390 1.26089 0.94914 1.01795 0.91653 0.86047 0.80408 0.79676 0.79129 1.19309 1.20114 1.18205 1.18872 0.94977 0.86317 1.48449 0.87927 1.21975 0.78378 0.93829 0.84352 1.75720 1.23964 0.96494 1.47710 1.22007 0.91790 0.95897 0.93997 0.92061 1.19980 0.96048 0.93482 0.95093 1.21109 0.96723 1.00433 0.92472 1.21137 1.00841 0.93692 0.98851 1.20993 1.01012 0.95587 0.97932 1.20974 1.00469 0.99000 0.94180 1.21018 1.01289 0.93230 0.98833 1.24236 0.98127 0.85041 0.98204 1.87366 1.23813 1.33449 1.77095 0.90781 0.85692 0.86660 0.86896 0.86789 0.86659 0.92503 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.44 11.84 55.56 0.66 -19.78 15 2 C 0.08 2.00 5.49 -17.34 -0.10 1.90 15 3 Si 0.92 18.66 29.57 -169.99 -5.03 13.64 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.45 -12.32 9.46 -37.69 -0.36 -12.68 15 8 H 0.10 2.74 7.86 -52.49 -0.41 2.33 15 9 C 0.41 11.57 7.37 -16.92 -0.12 11.44 15 10 N -0.69 -18.46 10.68 -54.24 -0.58 -19.04 15 11 C 0.07 1.71 3.96 -67.54 -0.27 1.44 15 12 H 0.06 1.37 8.07 -51.93 -0.42 0.95 15 13 C -0.05 -0.91 4.99 -104.63 -0.52 -1.43 15 14 C -0.09 -1.77 9.29 -39.58 -0.37 -2.14 15 15 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 15 16 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 15 17 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 15 18 C -0.13 -2.13 9.69 -39.59 -0.38 -2.51 15 19 C 0.02 0.51 7.68 38.10 0.29 0.80 15 20 O -0.31 -8.58 9.22 -17.28 -0.16 -8.74 15 21 H 0.28 6.67 8.29 -40.82 -0.34 6.34 15 22 H 0.13 2.73 7.65 -52.48 -0.40 2.33 15 23 H 0.12 1.62 8.06 -52.48 -0.42 1.19 15 24 H 0.11 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.11 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.06 1.25 7.86 -51.93 -0.41 0.84 15 28 H 0.08 1.57 8.14 -51.93 -0.42 1.14 15 LS Contribution 250.80 15.07 3.78 3.78 Total: -1.00 -29.70 250.80 -7.23 -36.94 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -2.89 Total: 3.60 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.02 Total: -10.40 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.08 Total: -38.82 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.16 Total: -8.74 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.70 -7.23 -36.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211738556.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.411 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds