Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31197 * 1 3 3 Si 1.86799 * 120.00454 * 2 1 4 4 H 1.48504 * 109.47062 * 264.68691 * 3 2 1 5 5 H 1.48500 * 109.46660 * 24.68184 * 3 2 1 6 6 H 1.48493 * 109.47157 * 144.68316 * 3 2 1 7 7 C 1.39112 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99934 * 1.13991 * 7 2 1 9 9 N 1.37273 * 120.00113 * 180.86299 * 7 2 1 10 10 N 1.40614 * 127.49681 * 337.93509 * 9 7 2 11 11 N 1.28845 * 106.95170 * 180.02562 * 10 9 7 12 12 N 1.28374 * 110.72580 * 0.02562 * 11 10 9 13 13 C 1.31789 * 110.54716 * 359.72196 * 12 11 10 14 14 C 1.47779 * 126.61465 * 180.30470 * 13 12 11 15 15 C 1.40052 * 120.56416 * 341.56948 * 14 13 12 16 16 C 1.38331 * 118.29058 * 179.97438 * 15 14 13 17 17 C 1.38373 * 119.30740 * 359.97438 * 16 15 14 18 18 N 1.31916 * 121.09392 * 0.02717 * 17 16 15 19 19 C 1.31698 * 121.87644 * 359.67872 * 18 17 16 20 20 H 0.97005 * 119.99557 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.85938 * 359.95768 * 15 14 13 22 22 H 1.08000 * 120.35017 * 180.02562 * 16 15 14 23 23 H 1.08004 * 119.44857 * 179.97438 * 17 16 15 24 24 H 1.08007 * 119.71611 * 180.29163 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.6059 1.9815 -1.3941 5 1 1.3919 2.6824 0.5847 6 1 3.4829 1.4750 0.8093 7 6 2.0075 -1.2048 0.0005 8 1 1.4675 -2.1400 -0.0177 9 7 3.3801 -1.2050 0.0184 10 7 4.2414 -0.1682 -0.3821 11 7 5.4456 -0.5888 -0.2000 12 7 5.4433 -1.7823 0.2730 13 6 4.2085 -2.2134 0.4345 14 6 3.7969 -3.5316 0.9607 15 6 4.7008 -4.6011 0.9884 16 6 4.2658 -5.8142 1.4913 17 6 2.9645 -5.9311 1.9470 18 7 2.1346 -4.9064 1.9087 19 6 2.5028 -3.7302 1.4446 20 1 -0.4850 0.8401 -0.0004 21 1 5.7113 -4.4820 0.6263 22 1 4.9351 -6.6610 1.5287 23 1 2.6224 -6.8773 2.3397 24 1 1.7959 -2.9136 1.4338 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213279701.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = 141.019843 kcal Electronic energy + Delta-G solvation = -13797.778409 eV Core-core repulsion = 11327.634082 eV Total energy + Delta-G solvation = -2470.144327 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.51073 -39.51323 -35.00132 -33.05532 -32.42990 -31.44040 -29.51044 -26.57914 -23.73663 -23.46554 -22.03181 -20.56525 -18.55910 -16.70763 -16.63170 -15.75785 -15.41908 -14.98465 -13.96015 -13.81401 -13.46106 -13.24673 -12.72445 -12.37152 -11.80922 -11.71111 -11.31985 -10.93143 -10.65551 -10.22399 -9.87418 -9.43886 -9.30592 -9.20473 -9.05146 -8.15576 -7.39041 -5.17899 1.10453 1.58078 2.40462 3.01570 3.13386 3.23656 3.43618 3.50697 3.89361 4.19304 4.37963 4.73592 5.03427 5.14581 5.31554 5.32905 5.63898 5.95171 6.07030 6.35146 6.39451 6.68398 6.88028 6.92271 7.03299 7.26248 7.97385 8.25695 8.30131 9.56657 9.85647 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.011465 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.868666 B = 2441.551524 C = 3160.085232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.078 3.922 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.284 4.284 8 H 0.151 0.849 9 N -0.164 5.164 10 N -0.197 5.197 11 N -0.102 5.102 12 N -0.325 5.325 13 C 0.121 3.879 14 C -0.028 4.028 15 C -0.053 4.053 16 C -0.176 4.176 17 C 0.083 3.917 18 N -0.480 5.480 19 C 0.103 3.897 20 H 0.302 0.698 21 H 0.141 0.859 22 H 0.134 0.866 23 H 0.151 0.849 24 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 -6.825 2.586 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.771 3.229 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.166 1.166 7 C -0.425 4.425 8 H 0.168 0.832 9 N 0.058 4.942 10 N -0.181 5.181 11 N -0.092 5.092 12 N -0.190 5.190 13 C -0.140 4.140 14 C -0.034 4.034 15 C -0.081 4.081 16 C -0.195 4.195 17 C -0.075 4.075 18 N -0.188 5.188 19 C -0.056 4.056 20 H 0.113 0.887 21 H 0.159 0.841 22 H 0.151 0.849 23 H 0.169 0.831 24 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.497 -5.851 2.481 6.529 hybrid contribution 0.154 0.279 -0.286 0.428 sum 1.651 -5.572 2.195 6.212 Atomic orbital electron populations 1.69521 1.06890 1.31841 1.32691 1.25679 0.95858 1.01598 0.91403 0.85607 0.78684 0.76881 0.81750 1.18394 1.22254 1.16614 1.20174 0.75212 0.98396 1.48701 0.83243 1.47850 1.07860 1.08883 1.29635 1.81830 0.94954 1.11984 1.29298 1.77428 1.13482 1.04295 1.14037 1.74175 1.17854 1.05916 1.21071 1.22411 0.86599 0.93927 1.11089 1.18429 0.95469 0.89414 1.00053 1.21611 0.99856 0.91088 0.95508 1.21984 0.97767 0.98137 1.01656 1.22789 0.90284 0.97638 0.96751 1.67747 1.36528 0.99796 1.14715 1.23622 0.94368 0.95160 0.92463 0.88712 0.84125 0.84850 0.83126 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.41 13.94 55.50 0.77 -17.64 14 2 C 0.08 1.86 5.50 -17.50 -0.10 1.76 14 3 Si 0.94 21.26 26.10 -169.99 -4.44 16.82 14 4 H -0.26 -5.94 7.11 56.52 0.40 -5.54 14 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 14 6 H -0.24 -5.89 6.18 56.52 0.35 -5.54 14 7 C -0.28 -6.88 9.19 -14.79 -0.14 -7.01 14 8 H 0.15 3.51 5.93 -52.48 -0.31 3.20 14 9 N -0.16 -4.11 3.58 -9.29 -0.03 -4.15 14 10 N -0.20 -5.17 8.85 60.35 0.53 -4.64 14 11 N -0.10 -2.65 13.35 60.35 0.81 -1.85 14 12 N -0.33 -7.96 12.07 32.55 0.39 -7.57 14 13 C 0.12 2.84 7.80 -153.91 -1.20 1.64 14 14 C -0.03 -0.55 5.88 -104.82 -0.62 -1.17 14 15 C -0.05 -0.87 9.85 -38.87 -0.38 -1.25 14 16 C -0.18 -2.35 10.10 -39.50 -0.40 -2.75 14 17 C 0.08 1.18 11.17 -17.47 -0.20 0.98 14 18 N -0.48 -8.44 10.35 -12.89 -0.13 -8.57 14 19 C 0.10 1.98 10.03 -17.11 -0.17 1.80 14 20 H 0.30 6.44 8.30 -40.82 -0.34 6.10 14 21 H 0.14 2.18 8.04 -52.48 -0.42 1.75 14 22 H 0.13 1.29 8.06 -52.49 -0.42 0.87 14 23 H 0.15 1.58 8.06 -52.48 -0.42 1.16 14 24 H 0.18 3.62 5.08 -52.48 -0.27 3.35 14 LS Contribution 221.62 15.07 3.34 3.34 Total: -1.00 -27.72 221.62 -2.99 -30.70 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -1.03 Total: -0.47 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.20 Total: -5.99 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 2.34 Total: -44.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.44 Total: 16.82 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.72 -2.99 -30.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213279701.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.724 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds