Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31197 * 1 3 3 Si 1.86799 * 120.00454 * 2 1 4 4 H 1.48504 * 109.47062 * 264.68691 * 3 2 1 5 5 H 1.48500 * 109.46660 * 24.68184 * 3 2 1 6 6 H 1.48493 * 109.47157 * 144.68316 * 3 2 1 7 7 C 1.39112 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99934 * 1.13991 * 7 2 1 9 9 N 1.37273 * 120.00113 * 180.86299 * 7 2 1 10 10 N 1.40614 * 127.49681 * 337.93509 * 9 7 2 11 11 N 1.28845 * 106.95170 * 180.02562 * 10 9 7 12 12 N 1.28374 * 110.72580 * 0.02562 * 11 10 9 13 13 C 1.31789 * 110.54716 * 359.72196 * 12 11 10 14 14 C 1.47779 * 126.61465 * 180.30470 * 13 12 11 15 15 C 1.40052 * 120.56416 * 341.56948 * 14 13 12 16 16 C 1.38331 * 118.29058 * 179.97438 * 15 14 13 17 17 C 1.38373 * 119.30740 * 359.97438 * 16 15 14 18 18 N 1.31916 * 121.09392 * 0.02717 * 17 16 15 19 19 C 1.31698 * 121.87644 * 359.67872 * 18 17 16 20 20 H 0.97005 * 119.99557 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.85938 * 359.95768 * 15 14 13 22 22 H 1.08000 * 120.35017 * 180.02562 * 16 15 14 23 23 H 1.08004 * 119.44857 * 179.97438 * 17 16 15 24 24 H 1.08007 * 119.71611 * 180.29163 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.6059 1.9815 -1.3941 5 1 1.3919 2.6824 0.5847 6 1 3.4829 1.4750 0.8093 7 6 2.0075 -1.2048 0.0005 8 1 1.4675 -2.1400 -0.0177 9 7 3.3801 -1.2050 0.0184 10 7 4.2414 -0.1682 -0.3821 11 7 5.4456 -0.5888 -0.2000 12 7 5.4433 -1.7823 0.2730 13 6 4.2085 -2.2134 0.4345 14 6 3.7969 -3.5316 0.9607 15 6 4.7008 -4.6011 0.9884 16 6 4.2658 -5.8142 1.4913 17 6 2.9645 -5.9311 1.9470 18 7 2.1346 -4.9064 1.9087 19 6 2.5028 -3.7302 1.4446 20 1 -0.4850 0.8401 -0.0004 21 1 5.7113 -4.4820 0.6263 22 1 4.9351 -6.6610 1.5287 23 1 2.6224 -6.8773 2.3397 24 1 1.7959 -2.9136 1.4338 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213279701.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = 122.225706 kcal Electronic energy + Delta-G solvation = -13798.593384 eV Core-core repulsion = 11327.634082 eV Total energy + Delta-G solvation = -2470.959302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.39640 -40.83901 -36.85124 -34.72492 -34.11816 -32.83395 -31.15130 -28.42653 -25.20038 -25.02931 -23.69075 -22.24673 -20.41726 -18.34418 -18.03706 -17.30815 -16.95086 -16.72727 -15.75888 -15.50469 -14.79782 -14.70882 -14.20759 -13.89928 -13.60849 -13.54445 -12.89304 -12.72785 -12.52890 -12.04472 -11.56623 -11.25766 -11.05139 -10.57294 -10.43721 -9.75247 -9.22557 -7.04496 -0.34028 0.30635 0.62756 1.20319 1.30433 1.40306 1.61809 1.68694 2.09882 2.45338 2.92505 3.23106 3.68645 3.78541 3.98733 4.06767 4.21697 4.49492 4.71175 4.85065 4.96706 5.08302 5.22561 5.33160 5.40783 5.75782 6.12039 6.43308 7.00646 7.78070 7.92603 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.011465 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.868666 B = 2441.551524 C = 3160.085232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.061 3.939 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.298 4.298 8 H 0.152 0.848 9 N -0.177 5.177 10 N -0.218 5.218 11 N -0.121 5.121 12 N -0.331 5.331 13 C 0.131 3.869 14 C -0.063 4.063 15 C -0.051 4.051 16 C -0.153 4.153 17 C 0.096 3.904 18 N -0.500 5.500 19 C 0.096 3.904 20 H 0.313 0.687 21 H 0.149 0.851 22 H 0.185 0.815 23 H 0.198 0.802 24 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -9.183 3.334 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.161 4.161 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.438 4.438 8 H 0.168 0.832 9 N 0.044 4.956 10 N -0.202 5.202 11 N -0.111 5.111 12 N -0.195 5.195 13 C -0.132 4.132 14 C -0.069 4.069 15 C -0.079 4.079 16 C -0.172 4.172 17 C -0.062 4.062 18 N -0.208 5.208 19 C -0.062 4.062 20 H 0.125 0.875 21 H 0.167 0.833 22 H 0.202 0.798 23 H 0.214 0.786 24 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.609 -8.186 3.227 8.945 hybrid contribution 0.151 0.748 -0.438 0.880 sum 1.760 -7.437 2.789 8.136 Atomic orbital electron populations 1.69491 1.06925 1.32949 1.32825 1.25938 0.96243 1.02398 0.91496 0.85137 0.77274 0.76497 0.80599 1.19371 1.19582 1.19760 1.20260 0.75075 0.98768 1.49664 0.83152 1.47917 1.08087 1.09187 1.30362 1.81763 0.95251 1.13081 1.30106 1.77381 1.13606 1.05041 1.15084 1.74106 1.18595 1.05593 1.21231 1.23137 0.86004 0.94783 1.09288 1.18529 0.96752 0.88854 1.02784 1.21870 0.99622 0.91317 0.95100 1.22481 0.98033 0.98058 0.98666 1.23651 0.90192 0.98008 0.94325 1.67785 1.37768 0.99911 1.15376 1.23284 0.93814 0.95698 0.93404 0.87505 0.83344 0.79813 0.78559 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.24 13.94 21.68 0.30 -36.94 14 2 C 0.06 2.96 5.50 85.00 0.47 3.43 14 3 Si 0.98 44.06 26.10 68.60 1.79 45.86 14 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 14 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14 6 H -0.27 -13.56 6.18 99.48 0.61 -12.95 14 7 C -0.30 -14.73 9.19 84.05 0.77 -13.96 14 8 H 0.15 7.28 5.93 -2.91 -0.02 7.27 14 9 N -0.18 -9.07 3.58 -183.29 -0.66 -9.73 14 10 N -0.22 -11.73 8.85 37.02 0.33 -11.40 14 11 N -0.12 -6.40 13.35 37.02 0.49 -5.90 14 12 N -0.33 -16.36 12.07 -50.94 -0.61 -16.97 14 13 C 0.13 6.20 7.80 136.23 1.06 7.26 14 14 C -0.06 -2.46 5.88 -19.99 -0.12 -2.58 14 15 C -0.05 -1.54 9.85 22.73 0.22 -1.32 14 16 C -0.15 -3.31 10.10 22.32 0.23 -3.08 14 17 C 0.10 2.26 11.17 84.71 0.95 3.21 14 18 N -0.50 -16.43 10.35 -194.68 -2.01 -18.45 14 19 C 0.10 3.65 10.03 85.04 0.85 4.51 14 20 H 0.31 13.15 8.30 -92.70 -0.77 12.38 14 21 H 0.15 4.20 8.04 -2.91 -0.02 4.17 14 22 H 0.18 2.21 8.06 -2.91 -0.02 2.18 14 23 H 0.20 2.83 8.06 -2.91 -0.02 2.81 14 24 H 0.16 6.57 5.08 -2.91 -0.01 6.55 14 Total: -1.00 -60.70 221.62 5.22 -55.48 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.16 Total: 0.59 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.43 Total: -2.54 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -2.16 Total: -99.39 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.79 Total: 45.86 kcal Total: -60.70 5.22 -55.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213279701.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.709 kcal (2) G-P(sol) polarization free energy of solvation -60.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds