Wall clock time and date at job start Mon Mar 30 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31165 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48504 * 109.46804 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47404 * 120.00003 * 3 2 1 7 7 C 1.39152 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00458 * 180.02562 * 7 2 1 9 9 N 1.37249 * 120.00135 * 359.97438 * 7 2 1 10 10 N 1.40607 * 127.50065 * 350.93953 * 9 7 2 11 11 N 1.28849 * 106.94468 * 180.24607 * 10 9 7 12 12 N 1.28374 * 110.72101 * 359.78180 * 11 10 9 13 13 C 1.31750 * 110.55194 * 359.97438 * 12 11 10 14 14 C 1.47832 * 126.61196 * 179.97438 * 13 12 11 15 15 C 1.40005 * 120.93037 * 151.10350 * 14 13 12 16 16 C 1.37957 * 118.99113 * 180.02562 * 15 14 13 17 17 N 1.31930 * 120.90288 * 0.02562 * 16 15 14 18 18 C 1.31924 * 122.06773 * 359.97438 * 17 16 15 19 19 C 1.37951 * 120.91303 * 359.97438 * 18 17 16 20 20 H 0.97002 * 120.00390 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.50925 * 0.02562 * 15 14 13 22 22 H 1.07998 * 119.55197 * 179.97438 * 16 15 14 23 23 H 1.08007 * 119.54672 * 179.97438 * 18 17 16 24 24 H 1.07997 * 120.50887 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2456 1.6177 0.0000 4 1 3.0994 1.6963 -1.2125 5 1 1.2807 2.7464 -0.0006 6 1 3.0994 1.6964 1.2125 7 6 2.0074 -1.2051 0.0005 8 1 3.0874 -1.2052 0.0010 9 7 1.3211 -2.3937 0.0016 10 7 -0.0608 -2.5841 0.1779 11 7 -0.2765 -3.8527 0.1128 12 7 0.8193 -4.4899 -0.0905 13 6 1.8331 -3.6523 -0.1716 14 6 3.2510 -4.0037 -0.3987 15 6 4.1187 -3.1136 -1.0429 16 6 5.4341 -3.4828 -1.2345 17 7 5.8760 -4.6549 -0.8206 18 6 5.0926 -5.5229 -0.2096 19 6 3.7637 -5.2359 0.0244 20 1 -0.4851 0.8400 -0.0004 21 1 3.7637 -2.1526 -1.3848 22 1 6.1111 -2.8033 -1.7307 23 1 5.4972 -6.4713 0.1119 24 1 3.1283 -5.9511 0.5255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213279799.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:06 Heat of formation + Delta-G solvation = 118.031883 kcal Electronic energy + Delta-G solvation = -13722.169662 eV Core-core repulsion = 11251.028502 eV Total energy + Delta-G solvation = -2471.141160 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03246 -40.76563 -36.76874 -34.71734 -33.55260 -32.10507 -31.36963 -28.37881 -25.34301 -24.64434 -23.62325 -22.10628 -20.30847 -18.25341 -17.59127 -17.10203 -16.56798 -16.48711 -16.10615 -14.95361 -14.78107 -14.60275 -14.03170 -13.89147 -13.36605 -13.15105 -12.76834 -12.26169 -12.16918 -12.13084 -11.51472 -11.27510 -10.86679 -10.46511 -10.06154 -10.02639 -8.97429 -6.93299 -0.14724 0.25170 0.91356 1.32183 1.56304 1.56536 1.85618 1.90096 2.27056 2.67359 2.96726 3.44398 3.65060 3.89369 4.13712 4.17345 4.33430 4.66957 4.73318 4.83313 4.94598 5.07176 5.33656 5.45355 5.66992 5.77025 6.23239 6.72099 7.03388 8.02242 8.26726 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.011779 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.019258 B = 2376.505200 C = 3313.879734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.000 4.000 3 Si 1.029 2.971 4 H -0.236 1.236 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.298 4.298 8 H 0.165 0.835 9 N -0.153 5.153 10 N -0.166 5.166 11 N -0.168 5.168 12 N -0.344 5.344 13 C 0.064 3.936 14 C 0.046 3.954 15 C -0.175 4.175 16 C 0.111 3.889 17 N -0.502 5.502 18 C 0.108 3.892 19 C -0.157 4.157 20 H 0.301 0.699 21 H 0.146 0.854 22 H 0.195 0.805 23 H 0.193 0.807 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 2.099 -1.407 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.219 4.219 3 Si 0.844 3.156 4 H -0.159 1.159 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.441 4.441 8 H 0.182 0.818 9 N 0.068 4.932 10 N -0.149 5.149 11 N -0.157 5.157 12 N -0.209 5.209 13 C -0.197 4.197 14 C 0.035 3.965 15 C -0.197 4.197 16 C -0.045 4.045 17 N -0.212 5.212 18 C -0.047 4.047 19 C -0.179 4.179 20 H 0.112 0.888 21 H 0.163 0.837 22 H 0.211 0.789 23 H 0.209 0.791 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.614 1.490 -1.369 11.789 hybrid contribution -0.796 1.136 0.201 1.402 sum 10.818 2.626 -1.168 11.193 Atomic orbital electron populations 1.70178 1.09189 1.32274 1.29094 1.27403 0.96628 1.05183 0.92712 0.84496 0.77954 0.71570 0.81583 1.15869 1.19208 1.17013 1.21573 0.94551 0.80037 1.47889 0.81762 1.48117 1.06166 1.06932 1.31942 1.82880 0.91262 1.09247 1.31561 1.77401 1.19286 1.00268 1.18774 1.73941 0.94924 1.28722 1.23322 1.23247 0.96168 0.82265 1.17970 1.17949 0.86109 0.95885 0.96580 1.22537 0.95338 1.01463 1.00328 1.23108 0.92715 0.93361 0.95320 1.67713 1.38930 1.03609 1.10929 1.23085 0.88694 0.99365 0.93605 1.22288 0.97846 0.96240 1.01540 0.88804 0.83684 0.78865 0.79053 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.26 11.98 21.69 0.26 -39.00 14 2 C 0.00 0.00 5.50 85.01 0.47 0.46 14 3 Si 1.03 30.90 29.55 68.60 2.03 32.92 14 4 H -0.24 -6.29 7.11 99.48 0.71 -5.58 14 5 H -0.27 -7.94 7.11 99.48 0.71 -7.23 14 6 H -0.25 -6.96 7.11 99.48 0.71 -6.25 14 7 C -0.30 -13.93 9.16 84.06 0.77 -13.16 14 8 H 0.17 6.44 5.63 -2.91 -0.02 6.42 14 9 N -0.15 -8.29 3.79 -183.26 -0.70 -8.99 14 10 N -0.17 -9.99 11.94 37.02 0.44 -9.54 14 11 N -0.17 -10.00 13.35 37.02 0.49 -9.51 14 12 N -0.34 -18.99 12.16 -50.92 -0.62 -19.61 14 13 C 0.06 3.22 7.72 136.26 1.05 4.27 14 14 C 0.05 1.84 5.85 -19.88 -0.12 1.73 14 15 C -0.17 -5.78 8.69 22.63 0.20 -5.58 14 16 C 0.11 2.95 11.17 84.61 0.95 3.90 14 17 N -0.50 -14.01 10.34 -196.15 -2.03 -16.04 14 18 C 0.11 2.92 11.17 84.61 0.95 3.86 14 19 C -0.16 -5.28 9.86 22.63 0.22 -5.06 14 20 H 0.30 13.44 8.30 -92.71 -0.77 12.67 14 21 H 0.15 4.72 5.97 -2.91 -0.02 4.70 14 22 H 0.19 3.52 8.06 -2.91 -0.02 3.50 14 23 H 0.19 3.59 8.06 -2.91 -0.02 3.57 14 24 H 0.14 4.56 8.06 -2.91 -0.02 4.53 14 Total: -1.00 -68.62 227.62 5.61 -63.01 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.25 Total: 16.32 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.48 Total: -9.57 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -2.15 Total: -102.69 kcal Atomic # 14 Polarization: 30.90 SS G_CDS: 2.03 Total: 32.92 kcal Total: -68.62 5.61 -63.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213279799.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.039 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds