Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.21344 * 2 1 4 4 C 1.52718 * 109.24746 * 119.43754 * 2 1 3 5 5 C 1.53320 * 108.38480 * 171.42914 * 4 2 1 6 6 C 1.52705 * 108.38841 * 289.98280 * 5 4 2 7 7 C 1.50723 * 110.59512 * 51.32577 * 6 5 4 8 8 C 1.39379 * 117.52020 * 162.10145 * 7 6 5 9 9 C 1.37272 * 120.90125 * 179.39329 * 8 7 6 10 10 C 1.40740 * 119.50645 * 0.46108 * 9 8 7 11 11 C 1.41399 * 120.37293 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00105 * 155.63162 * 11 10 9 13 13 C 1.39941 * 120.00079 * 335.62554 * 11 10 9 14 14 N 1.30831 * 120.00150 * 342.35184 * 13 11 10 15 15 Si 1.86797 * 120.00236 * 162.34755 * 13 11 10 16 16 H 1.48504 * 109.47281 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47016 * 300.00204 * 15 13 11 18 18 H 1.48504 * 109.47186 * 59.99870 * 15 13 11 19 19 C 1.40395 * 119.25145 * 359.69778 * 10 9 8 20 20 C 1.38150 * 122.41856 * 341.99654 * 7 6 5 21 21 H 1.09000 * 109.47078 * 179.43851 * 1 2 3 22 22 H 1.09004 * 109.47407 * 299.43606 * 1 2 3 23 23 H 1.08999 * 109.47373 * 59.43769 * 1 2 3 24 24 H 1.09004 * 109.67319 * 51.70742 * 4 2 1 25 25 H 1.08998 * 109.68326 * 291.15909 * 4 2 1 26 26 H 1.09003 * 109.67741 * 170.25999 * 5 4 2 27 27 H 1.08996 * 109.71450 * 49.72832 * 5 4 2 28 28 H 1.08997 * 109.25597 * 291.03713 * 6 5 4 29 29 H 1.09004 * 109.22240 * 171.59427 * 6 5 4 30 30 H 1.08003 * 119.54588 * 359.66128 * 8 7 6 31 31 H 1.08001 * 120.24543 * 180.21364 * 9 8 7 32 32 H 0.97001 * 119.99941 * 180.02562 * 14 13 11 33 33 H 1.08003 * 119.82719 * 180.21549 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0334 -0.7086 1.2557 5 6 3.5511 -0.8887 1.1337 6 6 3.8272 -1.9282 0.0496 7 6 3.0903 -1.5804 -1.2184 8 6 3.5177 -2.1866 -2.3985 9 6 2.8885 -1.9293 -3.5911 10 6 1.8033 -1.0337 -3.6232 11 6 1.1422 -0.7550 -4.8417 12 1 0.1184 -0.4110 -4.8342 13 6 1.8144 -0.9247 -6.0572 14 7 3.1204 -1.0001 -6.0776 15 14 0.8471 -1.0437 -7.6508 16 1 1.7860 -1.2204 -8.7878 17 1 -0.0742 -2.2064 -7.5850 18 1 0.0606 0.2007 -7.8466 19 6 1.3808 -0.4247 -2.4308 20 6 2.0267 -0.6991 -1.2389 21 1 -0.3633 -1.0276 -0.0101 22 1 -0.3634 0.5051 0.8950 23 1 -0.3634 0.5225 -0.8849 24 1 1.5539 -1.6835 1.3441 25 1 1.8047 -0.1055 2.1343 26 1 3.9575 -1.2333 2.0846 27 1 4.0130 0.0596 0.8592 28 1 3.4995 -2.9074 0.3987 29 1 4.8977 -1.9590 -0.1537 30 1 4.3525 -2.8713 -2.3735 31 1 3.2263 -2.4075 -4.4986 32 1 3.5863 -1.1174 -6.9202 33 1 0.5468 0.2613 -2.4442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214425014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = -14.462539 kcal Electronic energy + Delta-G solvation = -14246.443296 eV Core-core repulsion = 12042.063345 eV Total energy + Delta-G solvation = -2204.379951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80194 -35.62019 -33.20990 -32.62169 -29.36771 -28.30838 -26.27820 -24.73571 -21.69326 -21.41972 -20.01504 -18.70607 -16.89050 -15.24106 -14.74482 -14.58071 -13.98960 -13.65382 -13.08177 -12.75219 -12.39567 -12.24013 -12.08445 -11.45603 -11.39918 -11.14232 -10.95905 -10.87321 -10.69296 -10.47521 -10.35415 -10.07421 -9.87937 -9.19816 -9.17391 -9.01449 -7.29725 -7.11103 -6.70122 -4.28623 2.82455 3.06931 3.08750 3.11210 3.24862 3.96412 4.63316 5.32182 5.36778 5.39757 5.64027 5.81602 5.85070 6.08515 6.11462 6.21251 6.22388 6.35173 6.41854 6.46955 6.55581 6.61444 6.65089 6.72250 6.90498 7.07463 7.13916 7.34846 7.50203 7.66957 7.94852 8.11344 8.21454 8.36575 8.69783 8.95903 9.04321 10.24249 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.046170 B = 0.008263 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.314367 B = 3387.720508 C = 3876.367764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.055 4.055 7 C -0.200 4.200 8 C -0.107 4.107 9 C -0.160 4.160 10 C 0.109 3.891 11 C -0.466 4.466 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.797 5.797 15 Si 0.906 3.094 16 H -0.279 1.279 17 H -0.264 1.264 18 H -0.266 1.266 19 C -0.227 4.227 20 C -0.048 4.048 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.280 0.720 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -0.108 7.313 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.092 4.092 7 C -0.201 4.201 8 C -0.125 4.125 9 C -0.179 4.179 10 C 0.107 3.893 11 C -0.496 4.496 12 H 0.093 0.907 13 C -0.141 4.141 14 N -0.423 5.423 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.189 1.189 18 H -0.191 1.191 19 C -0.247 4.247 20 C -0.048 4.048 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.828 -0.122 7.136 7.185 hybrid contribution -0.283 -0.025 -0.939 0.981 sum -1.111 -0.148 6.197 6.298 Atomic orbital electron populations 1.21858 0.95476 1.01626 1.00747 1.19919 0.94986 0.98461 0.93166 0.91682 1.21541 0.95943 1.00314 0.96782 1.21488 0.96147 0.99733 0.97907 1.20113 0.98427 0.97260 0.93440 1.18874 1.01439 1.06121 0.93691 1.20673 0.99021 0.99738 0.93082 1.21288 0.99627 1.00638 0.96327 1.17529 0.90984 0.88715 0.92086 1.19513 0.99621 1.40274 0.90157 0.90662 1.25885 0.94689 0.92357 1.01147 1.69825 1.08137 1.35530 1.28790 0.86405 0.80290 0.79924 0.80284 1.20397 1.18900 1.19072 1.20969 1.04709 1.06200 0.92814 1.18980 0.95579 0.96959 0.93270 0.92887 0.93826 0.92218 0.92144 0.92921 0.92995 0.92260 0.93294 0.93103 0.89738 0.86519 0.90959 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.68 37.16 0.32 -1.96 16 2 C -0.05 -0.85 2.76 -91.93 -0.25 -1.11 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 4 C -0.11 -1.70 5.25 -26.71 -0.14 -1.84 16 5 C -0.12 -1.81 5.97 -26.72 -0.16 -1.97 16 6 C -0.06 -1.00 5.66 -28.02 -0.16 -1.16 16 7 C -0.20 -4.48 5.77 -104.22 -0.60 -5.09 16 8 C -0.11 -2.57 9.57 -39.51 -0.38 -2.95 16 9 C -0.16 -4.25 8.71 -38.99 -0.34 -4.59 16 10 C 0.11 2.97 5.57 -106.94 -0.60 2.37 16 11 C -0.47 -12.61 9.06 -37.74 -0.34 -12.96 16 12 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 13 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 14 N -0.80 -21.03 10.95 55.55 0.61 -20.43 16 15 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.23 -5.65 8.78 -38.74 -0.34 -5.99 16 20 C -0.05 -1.07 5.43 -104.64 -0.57 -1.64 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 24 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.08 1.84 8.05 -52.48 -0.42 1.42 16 31 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.09 2.18 6.31 -52.48 -0.33 1.85 16 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -27.48 264.49 -8.84 -36.32 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.76 Total: 3.15 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: -3.64 Total: -37.01 kcal Atomic # 7 Polarization: -21.03 SS G_CDS: 0.61 Total: -20.43 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.48 -8.84 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214425014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.854 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds