Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.21344 * 2 1 4 4 C 1.52718 * 109.24746 * 119.43754 * 2 1 3 5 5 C 1.53320 * 108.38480 * 171.42914 * 4 2 1 6 6 C 1.52705 * 108.38841 * 289.98280 * 5 4 2 7 7 C 1.50723 * 110.59512 * 51.32577 * 6 5 4 8 8 C 1.39379 * 117.52020 * 162.10145 * 7 6 5 9 9 C 1.37272 * 120.90125 * 179.39329 * 8 7 6 10 10 C 1.40740 * 119.50645 * 0.46108 * 9 8 7 11 11 C 1.41399 * 120.37293 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00105 * 155.63162 * 11 10 9 13 13 C 1.39941 * 120.00079 * 335.62554 * 11 10 9 14 14 N 1.30831 * 120.00150 * 342.35184 * 13 11 10 15 15 Si 1.86797 * 120.00236 * 162.34755 * 13 11 10 16 16 H 1.48504 * 109.47281 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47016 * 300.00204 * 15 13 11 18 18 H 1.48504 * 109.47186 * 59.99870 * 15 13 11 19 19 C 1.40395 * 119.25145 * 359.69778 * 10 9 8 20 20 C 1.38150 * 122.41856 * 341.99654 * 7 6 5 21 21 H 1.09000 * 109.47078 * 179.43851 * 1 2 3 22 22 H 1.09004 * 109.47407 * 299.43606 * 1 2 3 23 23 H 1.08999 * 109.47373 * 59.43769 * 1 2 3 24 24 H 1.09004 * 109.67319 * 51.70742 * 4 2 1 25 25 H 1.08998 * 109.68326 * 291.15909 * 4 2 1 26 26 H 1.09003 * 109.67741 * 170.25999 * 5 4 2 27 27 H 1.08996 * 109.71450 * 49.72832 * 5 4 2 28 28 H 1.08997 * 109.25597 * 291.03713 * 6 5 4 29 29 H 1.09004 * 109.22240 * 171.59427 * 6 5 4 30 30 H 1.08003 * 119.54588 * 359.66128 * 8 7 6 31 31 H 1.08001 * 120.24543 * 180.21364 * 9 8 7 32 32 H 0.97001 * 119.99941 * 180.02562 * 14 13 11 33 33 H 1.08003 * 119.82719 * 180.21549 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0334 -0.7086 1.2557 5 6 3.5511 -0.8887 1.1337 6 6 3.8272 -1.9282 0.0496 7 6 3.0903 -1.5804 -1.2184 8 6 3.5177 -2.1866 -2.3985 9 6 2.8885 -1.9293 -3.5911 10 6 1.8033 -1.0337 -3.6232 11 6 1.1422 -0.7550 -4.8417 12 1 0.1184 -0.4110 -4.8342 13 6 1.8144 -0.9247 -6.0572 14 7 3.1204 -1.0001 -6.0776 15 14 0.8471 -1.0437 -7.6508 16 1 1.7860 -1.2204 -8.7878 17 1 -0.0742 -2.2064 -7.5850 18 1 0.0606 0.2007 -7.8466 19 6 1.3808 -0.4247 -2.4308 20 6 2.0267 -0.6991 -1.2389 21 1 -0.3633 -1.0276 -0.0101 22 1 -0.3634 0.5051 0.8950 23 1 -0.3634 0.5225 -0.8849 24 1 1.5539 -1.6835 1.3441 25 1 1.8047 -0.1055 2.1343 26 1 3.9575 -1.2333 2.0846 27 1 4.0130 0.0596 0.8592 28 1 3.4995 -2.9074 0.3987 29 1 4.8977 -1.9590 -0.1537 30 1 4.3525 -2.8713 -2.3735 31 1 3.2263 -2.4075 -4.4986 32 1 3.5863 -1.1174 -6.9202 33 1 0.5468 0.2613 -2.4442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214425014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = -27.334703 kcal Electronic energy + Delta-G solvation = -14247.001475 eV Core-core repulsion = 12042.063345 eV Total energy + Delta-G solvation = -2204.938130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46876 -37.32751 -35.02876 -34.16493 -31.14679 -30.08750 -27.83970 -26.42672 -23.36086 -23.02190 -21.71617 -20.34475 -18.73172 -17.12303 -16.36150 -16.15904 -15.64100 -15.07999 -14.76629 -14.37442 -14.03884 -13.82225 -13.60165 -13.14195 -12.98458 -12.79996 -12.65548 -12.39274 -12.30580 -12.01468 -11.75936 -11.63180 -11.57174 -10.96351 -10.81998 -10.78263 -9.23135 -8.99235 -8.61557 -6.30954 0.99417 1.14125 1.35452 1.47097 1.52857 2.19954 2.71964 3.71707 3.99278 4.03085 4.09389 4.41998 4.44673 4.57504 4.69568 4.74430 4.87757 4.93082 5.03020 5.04716 5.09502 5.16673 5.18789 5.22496 5.35733 5.40663 5.52657 5.60380 5.62968 5.75981 6.06015 6.15466 6.31071 6.45566 6.73889 6.97035 7.08245 8.35021 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.046170 B = 0.008263 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.314367 B = 3387.720508 C = 3876.367764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 H 0.069 0.931 4 C -0.104 4.104 5 C -0.112 4.112 6 C -0.057 4.057 7 C -0.200 4.200 8 C -0.116 4.116 9 C -0.189 4.189 10 C 0.074 3.926 11 C -0.506 4.506 12 H 0.072 0.928 13 C 0.034 3.966 14 N -0.831 5.831 15 Si 0.981 3.019 16 H -0.267 1.267 17 H -0.261 1.261 18 H -0.259 1.259 19 C -0.243 4.243 20 C -0.052 4.052 21 H 0.045 0.955 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 0.052 9.246 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.094 4.094 7 C -0.201 4.201 8 C -0.135 4.135 9 C -0.208 4.208 10 C 0.072 3.928 11 C -0.536 4.536 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.457 5.457 15 Si 0.802 3.198 16 H -0.191 1.191 17 H -0.186 1.186 18 H -0.183 1.183 19 C -0.263 4.263 20 C -0.052 4.052 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.983 0.040 9.091 9.144 hybrid contribution -0.180 -0.076 -1.410 1.423 sum -1.163 -0.036 7.681 7.768 Atomic orbital electron populations 1.21811 0.94260 1.01475 1.01742 1.20032 0.96078 0.98353 0.92357 0.91253 1.21547 0.95686 1.00547 0.96339 1.21504 0.96377 0.98680 0.98420 1.20200 0.98260 0.98864 0.92085 1.19482 1.01011 1.04550 0.95067 1.20995 0.99299 1.00097 0.93076 1.21243 1.00885 1.01903 0.96781 1.17907 0.91893 0.89694 0.93284 1.19763 0.99854 1.42533 0.91459 0.91016 1.26757 0.95576 0.91309 1.04369 1.69889 1.09631 1.36151 1.30052 0.85273 0.78776 0.80016 0.75734 1.19086 1.18586 1.18322 1.21195 1.05277 1.06422 0.93381 1.19534 0.94851 0.96425 0.94420 0.93553 0.90388 0.93734 0.92177 0.89576 0.89535 0.92718 0.91910 0.92271 0.87950 0.88438 0.90307 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.68 71.98 0.63 -3.53 16 2 C -0.05 -1.69 2.76 -11.64 -0.03 -1.73 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.10 -2.81 5.25 30.61 0.16 -2.65 16 5 C -0.11 -3.06 5.97 30.60 0.18 -2.88 16 6 C -0.06 -1.90 5.66 29.76 0.17 -1.74 16 7 C -0.20 -8.80 5.77 -19.60 -0.11 -8.91 16 8 C -0.12 -5.69 9.57 22.32 0.21 -5.47 16 9 C -0.19 -10.52 8.71 22.65 0.20 -10.32 16 10 C 0.07 4.23 5.57 -21.36 -0.12 4.11 16 11 C -0.51 -28.76 9.06 23.46 0.21 -28.55 16 12 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 13 C 0.03 1.79 5.15 85.25 0.44 2.23 16 14 N -0.83 -45.56 10.95 21.83 0.24 -45.32 16 15 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 16 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 C -0.24 -12.45 8.78 22.81 0.20 -12.25 16 20 C -0.05 -2.32 5.43 -19.87 -0.11 -2.43 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.47 6.39 -2.39 -0.02 1.46 16 24 H 0.06 1.65 8.08 -2.38 -0.02 1.63 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 30 H 0.10 4.48 8.05 -2.91 -0.02 4.46 16 31 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 32 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 33 H 0.09 4.63 6.31 -2.91 -0.02 4.62 16 Total: -1.00 -61.82 264.49 5.38 -56.44 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 1.08 Total: 21.10 kcal Atomic # 6 Polarization: -76.13 SS G_CDS: 2.03 Total: -74.10 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.24 Total: -45.32 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -61.82 5.38 -56.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214425014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.108 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds