Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30589 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48496 * 109.46914 * 270.00127 * 3 2 1 5 5 H 1.48492 * 109.46895 * 30.00473 * 3 2 1 6 6 H 1.48500 * 109.46850 * 150.00313 * 3 2 1 7 7 C 1.40353 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99986 * 163.88142 * 7 2 1 9 9 C 1.40541 * 120.00143 * 343.88370 * 7 2 1 10 10 C 1.40948 * 121.51548 * 335.70399 * 9 7 2 11 11 C 1.38350 * 119.29355 * 179.97438 * 10 9 7 12 12 N 1.31250 * 122.71354 * 0.02562 * 11 10 9 13 13 C 1.33620 * 122.71715 * 359.97438 * 12 11 10 14 14 C 1.40583 * 121.10713 * 179.97438 * 13 12 11 15 15 C 1.36511 * 119.68602 * 180.02562 * 14 13 12 16 16 F 1.35102 * 119.50834 * 180.02562 * 15 14 13 17 17 C 1.39340 * 120.98062 * 0.02562 * 15 14 13 18 18 C 1.36666 * 120.72482 * 359.97438 * 17 15 14 19 19 C 1.39409 * 119.63952 * 0.02562 * 18 17 15 20 20 H 0.96994 * 119.99629 * 359.97438 * 1 2 3 21 21 H 1.07990 * 120.35443 * 359.96789 * 10 9 7 22 22 H 1.07998 * 118.64240 * 179.72001 * 11 10 9 23 23 H 1.07997 * 120.15552 * 0.07099 * 14 13 12 24 24 H 1.07993 * 119.63580 * 179.97438 * 17 15 14 25 25 H 1.07999 * 120.18175 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4874 2.0464 -1.4000 5 1 1.4375 2.6526 0.7001 6 1 3.5375 1.4400 0.7000 7 6 2.0076 -1.2155 -0.0005 8 1 3.0558 -1.2339 -0.2602 9 6 1.3463 -2.4089 0.3368 10 6 0.1887 -2.4078 1.1409 11 6 -0.4260 -3.6096 1.4442 12 7 0.0239 -4.7649 1.0137 13 6 1.1123 -4.8756 0.2465 14 6 1.5647 -6.1311 -0.1955 15 6 2.6805 -6.2106 -0.9779 16 9 3.1119 -7.4190 -1.4010 17 6 3.3812 -5.0640 -1.3466 18 6 2.9666 -3.8292 -0.9331 19 6 1.8306 -3.7155 -0.1331 20 1 -0.4849 0.8400 0.0004 21 1 -0.2142 -1.4788 1.5162 22 1 -1.3097 -3.5969 2.0649 23 1 1.0317 -7.0284 0.0821 24 1 4.2614 -5.1521 -1.9660 25 1 3.5165 -2.9463 -1.2237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214442588.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -29.152619 kcal Electronic energy + Delta-G solvation = -13511.206139 eV Core-core repulsion = 10981.469868 eV Total energy + Delta-G solvation = -2529.736272 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.83572 -40.80547 -37.31040 -36.28408 -33.38710 -31.00205 -30.30143 -28.03371 -24.59159 -23.86311 -22.57013 -19.88245 -18.89307 -17.95628 -17.43415 -16.85192 -16.52646 -15.92859 -15.50326 -15.15154 -14.57614 -14.35521 -14.29483 -13.79048 -13.41989 -13.04794 -12.73918 -12.37511 -12.11597 -12.02569 -11.77525 -11.42210 -10.57611 -9.86905 -9.34940 -9.05971 -8.90782 -6.67491 -0.12489 0.28012 1.17252 1.39661 1.55521 1.65693 2.10731 2.23415 2.74492 3.30980 3.68706 3.84657 4.11704 4.26324 4.28626 4.55912 4.64691 4.88751 4.93220 5.22922 5.26505 5.31577 5.43892 5.55040 5.77727 5.87342 6.12081 6.39354 6.53078 6.63841 7.70536 7.98265 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.009222 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.272401 B = 3035.633548 C = 3669.402811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.033 3.967 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.251 1.251 7 C -0.421 4.421 8 H 0.107 0.893 9 C 0.112 3.888 10 C -0.303 4.303 11 C 0.141 3.859 12 N -0.626 5.626 13 C 0.170 3.830 14 C -0.196 4.196 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.215 4.215 18 C -0.029 4.029 19 C -0.206 4.206 20 H 0.304 0.696 21 H 0.120 0.880 22 H 0.143 0.857 23 H 0.132 0.868 24 H 0.156 0.844 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 1.952 -1.618 5.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.174 1.174 7 C -0.448 4.448 8 H 0.125 0.875 9 C 0.104 3.896 10 C -0.327 4.327 11 C -0.016 4.016 12 N -0.345 5.345 13 C 0.047 3.953 14 C -0.216 4.216 15 C 0.101 3.899 16 F -0.124 7.124 17 C -0.235 4.235 18 C -0.048 4.048 19 C -0.210 4.210 20 H 0.116 0.884 21 H 0.138 0.862 22 H 0.161 0.839 23 H 0.150 0.850 24 H 0.174 0.826 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.321 1.247 -1.422 4.717 hybrid contribution 0.190 1.006 -0.128 1.031 sum 4.511 2.253 -1.550 5.275 Atomic orbital electron populations 1.69750 1.09789 1.32547 1.27491 1.27205 0.95602 1.05422 0.90729 0.84939 0.79163 0.74118 0.80169 1.17930 1.18778 1.17373 1.20188 0.98715 0.90973 1.34912 0.87474 1.19192 0.91526 0.91151 0.87752 1.21952 1.03614 0.98024 1.09091 1.22370 0.96868 0.88091 0.94249 1.67568 1.17124 1.28422 1.21343 1.18582 0.91404 0.92059 0.93257 1.20477 0.99238 0.97314 1.04608 1.17276 0.94730 0.80492 0.97403 1.91434 1.89385 1.43063 1.88468 1.20778 1.04051 0.90566 1.08074 1.20809 0.93279 0.97646 0.93056 1.20274 1.00757 0.94461 1.05508 0.88440 0.86243 0.83941 0.85040 0.82609 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.98 10.93 21.89 0.24 -34.74 15 2 C 0.03 1.42 5.22 85.39 0.45 1.86 15 3 Si 1.00 31.12 29.59 68.60 2.03 33.15 15 4 H -0.26 -7.63 7.11 99.48 0.71 -6.92 15 5 H -0.26 -7.91 7.11 99.48 0.71 -7.20 15 6 H -0.25 -7.62 7.11 99.48 0.71 -6.92 15 7 C -0.42 -19.38 8.59 23.35 0.20 -19.18 15 8 H 0.11 4.45 6.79 -2.91 -0.02 4.43 15 9 C 0.11 5.66 5.76 -19.74 -0.11 5.55 15 10 C -0.30 -15.39 8.81 22.96 0.20 -15.19 15 11 C 0.14 6.91 11.07 84.81 0.94 7.85 15 12 N -0.63 -32.07 10.26 -189.40 -1.94 -34.01 15 13 C 0.17 8.49 6.62 40.28 0.27 8.75 15 14 C -0.20 -8.58 9.96 22.44 0.22 -8.36 15 15 C 0.12 4.76 7.23 22.13 0.16 4.92 15 16 F -0.14 -5.18 17.24 44.97 0.78 -4.41 15 17 C -0.22 -7.82 9.95 22.17 0.22 -7.60 15 18 C -0.03 -1.19 9.44 22.18 0.21 -0.98 15 19 C -0.21 -10.02 5.91 -19.85 -0.12 -10.14 15 20 H 0.30 12.04 8.29 -92.71 -0.77 11.27 15 21 H 0.12 6.06 6.23 -2.92 -0.02 6.04 15 22 H 0.14 6.02 8.06 -2.91 -0.02 6.00 15 23 H 0.13 5.44 8.06 -2.91 -0.02 5.41 15 24 H 0.16 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.15 5.19 6.74 -2.91 -0.02 5.17 15 Total: -1.00 -55.76 230.12 4.96 -50.79 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.22 Total: 21.73 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.64 Total: -32.52 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -1.70 Total: -68.75 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 31.12 SS G_CDS: 2.03 Total: 33.15 kcal Total: -55.76 4.96 -50.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214442588.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.640 kcal (2) G-P(sol) polarization free energy of solvation -55.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds