Wall clock time and date at job start Mon Mar 30 2020 03:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86802 * 120.00500 * 2 1 4 4 H 1.48498 * 109.46988 * 266.37705 * 3 2 1 5 5 H 1.48506 * 109.46817 * 26.37194 * 3 2 1 6 6 H 1.48495 * 109.47184 * 146.37448 * 3 2 1 7 7 C 1.40202 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99703 * 348.63066 * 7 2 1 9 9 C 1.40873 * 120.00559 * 168.35213 * 7 2 1 10 10 C 1.40733 * 120.32797 * 323.76247 * 9 7 2 11 11 C 1.37522 * 119.87590 * 179.68780 * 10 9 7 12 12 C 1.38877 * 120.56197 * 0.59238 * 11 10 9 13 13 C 1.38155 * 120.67902 * 359.70250 * 12 11 10 14 14 C 1.39183 * 120.10013 * 359.97438 * 13 12 11 15 15 C 1.47550 * 120.28454 * 180.02562 * 14 13 12 16 16 N 1.29855 * 123.12099 * 174.25158 * 15 14 13 17 17 C 1.47596 * 108.42142 * 179.45950 * 16 15 14 18 18 C 1.54810 * 102.07582 * 345.29338 * 17 16 15 19 19 O 1.35004 * 123.11269 * 354.54388 * 15 14 13 20 20 H 0.97004 * 119.99833 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.06338 * 359.97340 * 10 9 7 22 22 H 1.07998 * 119.71572 * 180.32075 * 11 10 9 23 23 H 1.07993 * 119.65819 * 179.73560 * 12 11 10 24 24 H 1.08001 * 119.95090 * 179.97438 * 13 12 11 25 25 H 1.09001 * 111.07468 * 227.01351 * 17 16 15 26 26 H 1.09000 * 110.71069 * 103.41587 * 17 16 15 27 27 H 1.09003 * 111.04082 * 265.28865 * 18 17 16 28 28 H 1.08999 * 111.03610 * 141.35068 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5650 2.0021 -1.3973 5 1 1.4021 2.6736 0.6219 6 1 3.4979 1.4634 0.7753 7 6 2.0077 -1.2142 -0.0005 8 1 1.4835 -2.1405 0.1834 9 6 3.3947 -1.2267 -0.2468 10 6 3.9602 -0.3305 -1.1729 11 6 5.3162 -0.3465 -1.4014 12 6 6.1341 -1.2492 -0.7345 13 6 5.6027 -2.1433 0.1748 14 6 4.2349 -2.1470 0.4324 15 6 3.6631 -3.0998 1.4031 16 7 2.4165 -3.0807 1.7661 17 6 2.1948 -4.1751 2.7312 18 6 3.4668 -5.0369 2.5413 19 8 4.3889 -4.0687 2.0007 20 1 -0.4850 0.8401 0.0004 21 1 3.3310 0.3717 -1.6997 22 1 5.7480 0.3460 -2.1088 23 1 7.1965 -1.2519 -0.9283 24 1 6.2496 -2.8405 0.6865 25 1 1.2989 -4.7431 2.4807 26 1 2.1361 -3.7865 3.7479 27 1 3.2891 -5.8462 1.8330 28 1 3.8222 -5.4255 3.4956 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214445678.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:46 Heat of formation + Delta-G solvation = -5.477628 kcal Electronic energy + Delta-G solvation = -14185.403475 eV Core-core repulsion = 11780.154133 eV Total energy + Delta-G solvation = -2405.249342 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82089 -39.39482 -35.54551 -34.36777 -32.79544 -32.16660 -29.77717 -27.10011 -24.37554 -23.46885 -22.80463 -20.84254 -19.33053 -18.04885 -17.50607 -17.06499 -16.32644 -15.84632 -15.51729 -15.18778 -14.46246 -14.23797 -13.98959 -13.84151 -13.35795 -12.93648 -12.81659 -12.63642 -12.51820 -12.10746 -11.62408 -11.59530 -10.98947 -10.58336 -10.26752 -9.43320 -9.15345 -8.79159 -6.39170 0.25897 0.85396 1.28900 1.38969 1.50125 1.81713 2.14811 2.46672 2.72843 3.41738 3.54868 3.92164 4.06928 4.32696 4.38871 4.44048 4.53630 4.72645 4.76994 4.84840 5.00919 5.10218 5.35372 5.38116 5.55370 5.79836 5.93586 6.01539 6.30417 6.57389 6.76097 6.87026 7.13369 8.25070 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.013966 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.015025 B = 2004.417247 C = 2914.593859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.044 3.956 3 Si 0.960 3.040 4 H -0.245 1.245 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.429 4.429 8 H 0.088 0.912 9 C 0.096 3.904 10 C -0.250 4.250 11 C -0.061 4.061 12 C -0.231 4.231 13 C -0.041 4.041 14 C -0.190 4.190 15 C 0.349 3.651 16 N -0.564 5.564 17 C -0.023 4.023 18 C 0.023 3.977 19 O -0.362 6.362 20 H 0.292 0.708 21 H 0.109 0.891 22 H 0.138 0.862 23 H 0.141 0.859 24 H 0.126 0.874 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -3.130 1.805 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.171 4.171 3 Si 0.784 3.216 4 H -0.169 1.169 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.459 4.459 8 H 0.106 0.894 9 C 0.092 3.908 10 C -0.269 4.269 11 C -0.080 4.080 12 C -0.250 4.250 13 C -0.060 4.060 14 C -0.193 4.193 15 C 0.130 3.870 16 N -0.299 5.299 17 C -0.152 4.152 18 C -0.053 4.053 19 O -0.268 6.268 20 H 0.103 0.897 21 H 0.127 0.873 22 H 0.156 0.844 23 H 0.159 0.841 24 H 0.144 0.856 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.060 -2.723 1.812 7.781 hybrid contribution -0.062 -0.152 0.503 0.529 sum 6.998 -2.875 2.315 7.912 Atomic orbital electron populations 1.69627 1.09233 1.31233 1.36736 1.26911 0.95395 1.03943 0.90862 0.85628 0.78921 0.76637 0.80426 1.16939 1.20773 1.18458 1.19877 0.91863 0.95951 1.38164 0.89449 1.17752 0.92843 0.90620 0.89603 1.21350 0.96469 1.05514 1.03520 1.21241 0.92618 0.96896 0.97221 1.20870 1.00145 1.00761 1.03252 1.21112 0.92547 0.96805 0.95584 1.17990 0.93895 1.04342 1.03075 1.23591 0.86385 0.87551 0.89431 1.75846 1.14918 1.22877 1.16283 1.24257 0.99570 0.92824 0.98557 1.24696 0.88235 0.91067 1.01341 1.86911 1.36458 1.33901 1.69501 0.89727 0.87286 0.84403 0.84092 0.85605 0.88324 0.89552 0.89406 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.06 13.92 21.87 0.30 -46.75 15 2 C 0.04 2.38 5.46 85.34 0.47 2.85 15 3 Si 0.96 43.01 24.61 68.60 1.69 44.70 15 4 H -0.24 -9.97 6.43 99.48 0.64 -9.33 15 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 6 H -0.26 -12.06 7.07 99.48 0.70 -11.35 15 7 C -0.43 -24.52 8.15 23.39 0.19 -24.33 15 8 H 0.09 5.51 6.15 -2.91 -0.02 5.49 15 9 C 0.10 5.00 5.02 -21.11 -0.11 4.89 15 10 C -0.25 -11.43 7.21 22.71 0.16 -11.26 15 11 C -0.06 -2.32 10.01 22.25 0.22 -2.09 15 12 C -0.23 -8.33 10.03 22.40 0.22 -8.11 15 13 C -0.04 -1.64 9.66 22.48 0.22 -1.42 15 14 C -0.19 -9.16 5.93 -19.68 -0.12 -9.28 15 15 C 0.35 16.40 7.52 87.44 0.66 17.06 15 16 N -0.56 -27.61 8.39 -451.02 -3.78 -31.39 15 17 C -0.02 -0.82 8.13 86.79 0.71 -0.12 15 18 C 0.02 0.68 8.17 72.60 0.59 1.27 15 19 O -0.36 -14.29 10.69 -82.76 -0.88 -15.18 15 20 H 0.29 14.69 8.29 -92.71 -0.77 13.92 15 21 H 0.11 4.92 4.89 -2.91 -0.01 4.90 15 22 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 23 H 0.14 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.13 4.47 7.77 -2.91 -0.02 4.45 15 25 H 0.10 3.25 8.14 -2.39 -0.02 3.23 15 26 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 28 H 0.14 2.97 8.14 -2.39 -0.02 2.95 15 Total: -1.00 -64.58 239.29 1.65 -62.94 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.10 Total: 16.22 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.22 Total: -30.54 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.48 Total: -78.14 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.88 Total: -15.18 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.69 Total: 44.70 kcal Total: -64.58 1.65 -62.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214445678.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.462 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds