Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 120.00546 * 2 1 4 4 H 1.48497 * 109.47244 * 274.70525 * 3 2 1 5 5 H 1.48507 * 109.46965 * 34.70447 * 3 2 1 6 6 H 1.48505 * 109.47209 * 154.70146 * 3 2 1 7 7 C 1.40047 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00605 * 163.28154 * 7 2 1 9 9 C 1.41528 * 119.99504 * 343.28652 * 7 2 1 10 10 C 1.40959 * 121.01522 * 335.82816 * 9 7 2 11 11 C 1.38053 * 118.83523 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.52764 * 179.97438 * 11 10 9 13 13 N 1.32195 * 120.94461 * 0.02562 * 11 10 9 14 14 C 1.32062 * 122.28063 * 0.02562 * 13 11 10 15 15 C 1.37664 * 121.04779 * 359.73451 * 14 13 11 16 16 C 1.50702 * 120.54039 * 180.27101 * 15 14 13 17 17 F 1.39901 * 109.47166 * 120.25134 * 16 15 14 18 18 F 1.39899 * 109.46962 * 240.25238 * 16 15 14 19 19 H 0.97003 * 119.99398 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.58450 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.47451 * 180.02562 * 14 13 11 22 22 H 1.09000 * 109.47127 * 0.25317 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3896 2.1037 -1.3953 5 1 1.4922 2.6219 0.7972 6 1 3.5852 1.4133 0.5983 7 6 2.0076 -1.2129 0.0005 8 1 3.0533 -1.2329 -0.2685 9 6 1.3447 -2.4124 0.3536 10 6 0.1934 -2.3938 1.1667 11 6 -0.4178 -3.5906 1.4829 12 9 -1.5218 -3.5891 2.2617 13 7 0.0622 -4.7381 1.0354 14 6 1.1381 -4.8029 0.2723 15 6 1.8137 -3.6630 -0.1008 16 6 3.0367 -3.7498 -0.9770 17 9 2.8181 -3.0286 -2.1557 18 9 4.1357 -3.2122 -0.2984 19 1 -0.4849 0.8401 0.0004 20 1 -0.2036 -1.4597 1.5359 21 1 1.4907 -5.7652 -0.0684 22 1 3.2354 -4.7934 -1.2212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238551868.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = -130.058101 kcal Electronic energy + Delta-G solvation = -14391.694473 eV Core-core repulsion = 11303.353082 eV Total energy + Delta-G solvation = -3088.341391 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.99282 -47.83597 -45.96922 -38.40409 -34.43133 -31.43291 -30.15667 -26.67279 -24.74004 -22.24260 -20.85038 -18.09944 -16.96734 -16.23644 -16.15241 -15.96005 -15.23848 -14.91888 -14.77773 -13.38214 -13.11221 -12.94277 -12.46212 -12.39463 -12.34715 -11.93309 -11.57757 -11.50683 -11.32186 -10.93712 -10.46948 -9.87335 -9.64262 -8.44236 -8.36510 -7.84039 -7.14323 -4.93405 2.19630 2.53339 2.92468 2.97079 3.05524 3.70178 4.30297 4.66972 4.89633 5.14008 5.29139 5.62070 5.82083 6.08254 6.41758 6.59888 6.81002 6.98877 7.04216 7.46597 7.78808 8.15134 8.36019 8.41073 9.01845 9.76701 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.015642 C = 0.010103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.360855 B = 1789.596944 C = 2770.827041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.424 4.424 8 H 0.097 0.903 9 C 0.164 3.836 10 C -0.233 4.233 11 C 0.293 3.707 12 F -0.141 7.141 13 N -0.609 5.609 14 C 0.178 3.822 15 C -0.349 4.349 16 C 0.342 3.658 17 F -0.206 7.206 18 F -0.212 7.212 19 H 0.290 0.710 20 H 0.140 0.860 21 H 0.136 0.864 22 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 -0.908 -1.142 4.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.148 4.148 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.453 4.453 8 H 0.115 0.885 9 C 0.156 3.844 10 C -0.257 4.257 11 C 0.149 3.851 12 F -0.121 7.121 13 N -0.330 5.330 14 C 0.022 3.978 15 C -0.356 4.356 16 C 0.287 3.713 17 F -0.187 7.187 18 F -0.193 7.193 19 H 0.102 0.898 20 H 0.157 0.843 21 H 0.154 0.846 22 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.079 -1.467 -0.868 3.519 hybrid contribution 0.436 1.577 -0.149 1.643 sum 3.515 0.110 -1.016 3.660 Atomic orbital electron populations 1.69758 1.08034 1.30583 1.30465 1.26157 0.94865 1.02328 0.91449 0.86095 0.80853 0.79248 0.79635 1.18918 1.19570 1.17764 1.19934 0.98522 0.90348 1.36475 0.88471 1.17289 0.89155 0.91576 0.86333 1.21892 1.01584 0.96605 1.05617 1.18061 0.84423 0.90908 0.91740 1.91456 1.50995 1.97207 1.72416 1.66722 1.17411 1.28334 1.20516 1.21370 0.89048 0.96081 0.91341 1.20978 1.04896 0.96318 1.13454 1.19746 0.82406 0.91230 0.77891 1.92956 1.95114 1.81499 1.49139 1.92922 1.56515 1.88862 1.80996 0.89835 0.84274 0.84635 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.57 10.94 55.55 0.61 -17.96 14 2 C 0.08 1.77 5.20 -17.34 -0.09 1.68 14 3 Si 0.92 17.61 29.59 -169.99 -5.03 12.58 14 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 14 5 H -0.27 -5.02 7.11 56.52 0.40 -4.61 14 6 H -0.25 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.42 -10.65 7.97 -37.65 -0.30 -10.95 14 8 H 0.10 2.41 6.21 -52.49 -0.33 2.08 14 9 C 0.16 4.20 5.58 -106.54 -0.59 3.60 14 10 C -0.23 -6.00 8.76 -38.62 -0.34 -6.34 14 11 C 0.29 7.36 8.40 -17.46 -0.15 7.22 14 12 F -0.14 -3.38 17.28 2.25 0.04 -3.34 14 13 N -0.61 -14.72 10.35 -13.77 -0.14 -14.86 14 14 C 0.18 3.84 10.81 -17.66 -0.19 3.64 14 15 C -0.35 -7.97 5.43 -103.75 -0.56 -8.53 14 16 C 0.34 6.72 4.97 36.01 0.18 6.89 14 17 F -0.21 -4.41 16.60 2.25 0.04 -4.37 14 18 F -0.21 -4.37 15.84 2.25 0.04 -4.33 14 19 H 0.29 6.30 8.29 -40.82 -0.34 5.96 14 20 H 0.14 3.63 6.22 -52.49 -0.33 3.30 14 21 H 0.14 2.30 7.94 -52.49 -0.42 1.89 14 22 H 0.09 1.41 7.89 -51.93 -0.41 1.00 14 LS Contribution 215.61 15.07 3.25 3.25 Total: -1.00 -27.42 215.61 -3.86 -31.28 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -0.61 Total: 0.54 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.05 Total: -2.78 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.47 Total: -32.82 kcal Atomic # 9 Polarization: -12.16 SS G_CDS: 0.11 Total: -12.05 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -27.42 -3.86 -31.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551868.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.777 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds