Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 120.00546 * 2 1 4 4 H 1.48497 * 109.47244 * 274.70525 * 3 2 1 5 5 H 1.48507 * 109.46965 * 34.70447 * 3 2 1 6 6 H 1.48505 * 109.47209 * 154.70146 * 3 2 1 7 7 C 1.40047 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00605 * 163.28154 * 7 2 1 9 9 C 1.41528 * 119.99504 * 343.28652 * 7 2 1 10 10 C 1.40959 * 121.01522 * 335.82816 * 9 7 2 11 11 C 1.38053 * 118.83523 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.52764 * 179.97438 * 11 10 9 13 13 N 1.32195 * 120.94461 * 0.02562 * 11 10 9 14 14 C 1.32062 * 122.28063 * 0.02562 * 13 11 10 15 15 C 1.37664 * 121.04779 * 359.73451 * 14 13 11 16 16 C 1.50702 * 120.54039 * 180.27101 * 15 14 13 17 17 F 1.39901 * 109.47166 * 120.25134 * 16 15 14 18 18 F 1.39899 * 109.46962 * 240.25238 * 16 15 14 19 19 H 0.97003 * 119.99398 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.58450 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.47451 * 180.02562 * 14 13 11 22 22 H 1.09000 * 109.47127 * 0.25317 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3896 2.1037 -1.3953 5 1 1.4922 2.6219 0.7972 6 1 3.5852 1.4133 0.5983 7 6 2.0076 -1.2129 0.0005 8 1 3.0533 -1.2329 -0.2685 9 6 1.3447 -2.4124 0.3536 10 6 0.1934 -2.3938 1.1667 11 6 -0.4178 -3.5906 1.4829 12 9 -1.5218 -3.5891 2.2617 13 7 0.0622 -4.7381 1.0354 14 6 1.1381 -4.8029 0.2723 15 6 1.8137 -3.6630 -0.1008 16 6 3.0367 -3.7498 -0.9770 17 9 2.8181 -3.0286 -2.1557 18 9 4.1357 -3.2122 -0.2984 19 1 -0.4849 0.8401 0.0004 20 1 -0.2036 -1.4597 1.5359 21 1 1.4907 -5.7652 -0.0684 22 1 3.2354 -4.7934 -1.2212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238551868.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = -146.416836 kcal Electronic energy + Delta-G solvation = -14392.403841 eV Core-core repulsion = 11303.353082 eV Total energy + Delta-G solvation = -3089.050759 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.75572 -49.57747 -47.56885 -40.22072 -36.24579 -33.23389 -31.97166 -28.51999 -26.42437 -24.05218 -22.63513 -19.93963 -18.65418 -17.90669 -17.83016 -17.74659 -16.94634 -16.73762 -16.56914 -15.16028 -14.82390 -14.57236 -14.27167 -14.12907 -13.98917 -13.73459 -13.27404 -13.15553 -12.95633 -12.69099 -12.04374 -11.54736 -11.37987 -10.29327 -10.22120 -9.68763 -8.91865 -6.82199 0.35052 0.75050 1.34789 1.45753 1.52497 2.10762 2.50546 3.01298 3.28008 3.31114 3.72164 4.04915 4.14746 4.50606 4.61696 4.75182 4.99892 5.15884 5.23977 5.59628 5.92491 6.25909 6.49989 6.55721 7.18964 8.02496 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.015642 C = 0.010103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.360855 B = 1789.596944 C = 2770.827041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.448 4.448 8 H 0.095 0.905 9 C 0.136 3.864 10 C -0.256 4.256 11 C 0.284 3.716 12 F -0.141 7.141 13 N -0.622 5.622 14 C 0.183 3.817 15 C -0.361 4.361 16 C 0.338 3.662 17 F -0.219 7.219 18 F -0.219 7.219 19 H 0.300 0.700 20 H 0.125 0.875 21 H 0.190 0.810 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -1.265 -1.756 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.476 4.476 8 H 0.113 0.887 9 C 0.128 3.872 10 C -0.280 4.280 11 C 0.139 3.861 12 F -0.120 7.120 13 N -0.343 5.343 14 C 0.027 3.973 15 C -0.368 4.368 16 C 0.285 3.715 17 F -0.200 7.200 18 F -0.201 7.201 19 H 0.111 0.889 20 H 0.143 0.857 21 H 0.207 0.793 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.157 -1.844 -1.487 4.784 hybrid contribution 0.072 1.629 0.036 1.631 sum 4.228 -0.215 -1.451 4.475 Atomic orbital electron populations 1.69785 1.09397 1.32078 1.30524 1.27032 0.95556 1.05350 0.90464 0.85084 0.79332 0.74945 0.79948 1.18190 1.18336 1.17785 1.20131 0.98569 0.91362 1.37560 0.88733 1.17714 0.89456 0.93300 0.86716 1.21839 1.02752 0.96370 1.07073 1.18217 0.84598 0.91317 0.91995 1.91442 1.50923 1.97250 1.72392 1.66856 1.18571 1.27518 1.21362 1.22174 0.87570 0.97948 0.89559 1.21434 1.06158 0.95682 1.13506 1.20236 0.80840 0.93758 0.76685 1.92928 1.95159 1.82224 1.49703 1.92902 1.56608 1.89300 1.81249 0.88852 0.85709 0.79334 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.99 10.94 21.84 0.24 -38.76 14 2 C 0.04 1.71 5.20 85.30 0.44 2.16 14 3 Si 0.99 35.61 29.59 68.60 2.03 37.64 14 4 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 5 H -0.26 -8.78 7.11 99.48 0.71 -8.07 14 6 H -0.25 -9.09 7.11 99.48 0.71 -8.38 14 7 C -0.45 -22.60 7.97 23.52 0.19 -22.41 14 8 H 0.09 4.69 6.21 -2.91 -0.02 4.67 14 9 C 0.14 6.97 5.58 -21.10 -0.12 6.86 14 10 C -0.26 -13.46 8.76 22.89 0.20 -13.26 14 11 C 0.28 14.32 8.40 84.59 0.71 15.03 14 12 F -0.14 -6.80 17.28 44.97 0.78 -6.02 14 13 N -0.62 -29.21 10.35 -197.47 -2.04 -31.26 14 14 C 0.18 7.37 10.81 84.52 0.91 8.29 14 15 C -0.36 -15.88 5.43 -19.30 -0.10 -15.98 14 16 C 0.34 12.37 4.97 71.24 0.35 12.72 14 17 F -0.22 -8.99 16.60 44.97 0.75 -8.24 14 18 F -0.22 -8.62 15.84 44.97 0.71 -7.90 14 19 H 0.30 13.09 8.29 -92.71 -0.77 12.32 14 20 H 0.13 6.77 6.22 -2.91 -0.02 6.75 14 21 H 0.19 5.45 7.94 -2.91 -0.02 5.42 14 22 H 0.16 3.83 7.89 -2.39 -0.02 3.81 14 Total: -1.00 -59.18 215.61 6.32 -52.86 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.27 Total: 8.28 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 2.59 Total: -6.60 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.80 Total: -70.01 kcal Atomic # 9 Polarization: -24.40 SS G_CDS: 2.24 Total: -22.17 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -59.18 6.32 -52.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551868.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.556 kcal (2) G-P(sol) polarization free energy of solvation -59.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds