Wall clock time and date at job start Mon Mar 30 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48496 * 109.47734 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47009 * 300.00417 * 3 2 1 6 6 H 1.48506 * 109.46961 * 60.00005 * 3 2 1 7 7 C 1.39944 * 120.00487 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00004 * 197.62373 * 7 2 1 9 9 C 1.41334 * 119.99494 * 17.61862 * 7 2 1 10 10 C 1.40698 * 120.68817 * 24.07807 * 9 7 2 11 11 N 1.31468 * 120.42283 * 179.97438 * 10 9 7 12 12 C 1.32161 * 122.06389 * 359.97438 * 11 10 9 13 13 C 1.38374 * 121.36263 * 0.25675 * 12 11 10 14 14 C 1.50696 * 120.30196 * 179.71854 * 13 12 11 15 15 F 1.39898 * 109.47102 * 120.00208 * 14 13 12 16 16 F 1.39902 * 109.47527 * 239.99922 * 14 13 12 17 17 C 1.38437 * 119.39110 * 359.51532 * 13 12 11 18 18 F 1.35106 * 120.93280 * 180.22520 * 17 13 12 19 19 H 0.96995 * 120.00397 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.78659 * 359.97438 * 10 9 7 21 21 H 1.07995 * 119.31323 * 179.97438 * 12 11 10 22 22 H 1.08999 * 109.47285 * 0.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0083 -1.2119 -0.0005 8 1 3.0502 -1.2339 0.2826 9 6 1.3513 -2.4070 -0.3716 10 6 0.2127 -2.3739 -1.1974 11 7 -0.3941 -3.4888 -1.5398 12 6 0.0300 -4.6722 -1.1317 13 6 1.1389 -4.7970 -0.3136 14 6 1.5979 -6.1579 0.1427 15 9 2.9051 -6.3826 -0.3023 16 9 1.5644 -6.2172 1.5401 17 6 1.8253 -3.6605 0.0785 18 9 2.9146 -3.7465 0.8731 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1653 -1.4265 -1.5524 21 1 -0.5027 -5.5597 -1.4396 22 1 0.9379 -6.9211 -0.2696 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238558591.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:46 Heat of formation + Delta-G solvation = -133.185796 kcal Electronic energy + Delta-G solvation = -14312.500062 eV Core-core repulsion = 11224.023044 eV Total energy + Delta-G solvation = -3088.477018 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.50313 -47.48930 -46.41358 -38.42462 -34.35810 -31.46300 -30.57727 -25.97299 -25.41394 -21.82431 -21.32171 -17.84709 -17.13723 -16.68076 -16.65661 -15.85808 -15.52908 -14.95836 -14.37826 -13.42883 -13.30659 -13.28797 -12.80986 -12.72235 -12.29444 -12.19455 -11.77568 -11.44889 -11.25572 -10.99398 -10.68772 -10.00572 -9.60826 -8.44303 -8.38131 -7.98252 -7.16997 -4.73998 2.11459 2.38751 2.92320 2.96165 3.00154 3.70044 4.28730 4.31879 4.73892 5.11065 5.18861 5.46261 5.64899 5.76165 6.21824 6.54322 6.78704 6.82504 7.00721 7.43157 7.61292 8.03289 8.29842 8.37822 9.31923 9.79164 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.009945 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.172771 B = 2814.880764 C = 3203.581641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.433 4.433 8 H 0.090 0.910 9 C 0.034 3.966 10 C 0.076 3.924 11 N -0.477 5.477 12 C 0.004 3.996 13 C -0.222 4.222 14 C 0.321 3.679 15 F -0.206 7.206 16 F -0.205 7.205 17 C 0.036 3.964 18 F -0.143 7.143 19 H 0.291 0.709 20 H 0.163 0.837 21 H 0.134 0.866 22 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -3.188 -0.823 3.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.147 4.147 3 Si 0.745 3.255 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.108 0.892 9 C 0.028 3.972 10 C -0.089 4.089 11 N -0.185 5.185 12 C -0.150 4.150 13 C -0.226 4.226 14 C 0.267 3.733 15 F -0.187 7.187 16 F -0.186 7.186 17 C 0.010 3.990 18 F -0.122 7.122 19 H 0.102 0.898 20 H 0.180 0.820 21 H 0.151 0.849 22 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.098 -3.047 -1.278 3.306 hybrid contribution 1.329 0.623 0.897 1.720 sum 1.427 -2.424 -0.381 2.839 Atomic orbital electron populations 1.69739 1.07801 1.30543 1.32149 1.26049 0.94913 1.02058 0.91708 0.86016 0.80987 0.79519 0.79002 1.17973 1.19137 1.19492 1.19596 0.98555 0.90472 1.37556 0.89166 1.18643 0.94507 0.91309 0.92741 1.23084 0.94336 0.95553 0.95896 1.67248 1.30417 0.98426 1.22373 1.21421 0.96006 0.95607 1.01949 1.20931 1.02016 0.92703 1.06924 1.20230 0.80693 0.96728 0.75634 1.92968 1.40938 1.95810 1.89013 1.92974 1.96537 1.97552 1.31585 1.17748 0.88942 0.93976 0.98313 1.91354 1.52045 1.96965 1.71823 0.89798 0.82007 0.84871 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.57 10.95 55.55 0.61 -17.97 14 2 C 0.07 1.71 5.16 -17.33 -0.09 1.62 14 3 Si 0.92 17.38 29.59 -169.99 -5.03 12.35 14 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.43 -11.05 8.84 -37.77 -0.33 -11.38 14 8 H 0.09 2.27 7.79 -52.49 -0.41 1.86 14 9 C 0.03 0.88 5.59 -106.60 -0.60 0.28 14 10 C 0.08 1.92 9.90 -16.78 -0.17 1.75 14 11 N -0.48 -11.47 10.33 -12.60 -0.13 -11.60 14 12 C 0.00 0.09 10.82 -17.36 -0.19 -0.09 14 13 C -0.22 -4.95 5.38 -104.50 -0.56 -5.52 14 14 C 0.32 6.01 5.20 36.00 0.19 6.20 14 15 F -0.21 -4.07 17.13 2.25 0.04 -4.03 14 16 F -0.21 -4.12 17.15 2.25 0.04 -4.09 14 17 C 0.04 0.92 7.21 -38.32 -0.28 0.64 14 18 F -0.14 -3.65 16.21 2.25 0.04 -3.62 14 19 H 0.29 6.17 8.30 -40.82 -0.34 5.83 14 20 H 0.16 4.09 6.14 -52.49 -0.32 3.77 14 21 H 0.13 2.33 7.94 -52.49 -0.42 1.91 14 22 H 0.11 1.56 7.88 -51.93 -0.41 1.15 14 LS Contribution 218.83 15.07 3.30 3.30 Total: -1.00 -27.31 218.83 -3.86 -31.17 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -0.69 Total: 0.98 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.02 Total: -6.50 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: 0.48 Total: -29.57 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 0.11 Total: -11.73 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.31 -3.86 -31.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238558591.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.016 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds