Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00452 * 2 1 4 4 H 1.48493 * 109.47661 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46644 * 300.00314 * 3 2 1 6 6 H 1.48503 * 109.46880 * 59.99657 * 3 2 1 7 7 C 1.40045 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00303 * 168.97442 * 7 2 1 9 9 C 1.41524 * 119.99688 * 348.96786 * 7 2 1 10 10 C 1.41124 * 121.01462 * 331.02224 * 9 7 2 11 11 C 1.37621 * 118.92182 * 180.29363 * 10 9 7 12 12 N 1.32087 * 121.05311 * 359.97438 * 11 10 9 13 13 C 1.32174 * 122.28103 * 0.02562 * 12 11 10 14 14 F 1.35102 * 119.52769 * 180.02562 * 13 12 11 15 15 C 1.38095 * 120.93934 * 0.02562 * 13 12 11 16 16 C 1.50701 * 120.58095 * 179.97438 * 15 13 12 17 17 F 1.39902 * 109.47083 * 20.90031 * 16 15 13 18 18 F 1.39899 * 109.46943 * 140.90015 * 16 15 13 19 19 H 0.97000 * 119.99501 * 359.97438 * 1 2 3 20 20 H 1.07995 * 120.54064 * 0.25003 * 10 9 7 21 21 H 1.08004 * 119.47710 * 179.97438 * 11 10 9 22 22 H 1.09004 * 109.47171 * 260.89876 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0726 -1.2214 -0.1794 9 6 1.3196 -2.4272 0.2335 10 6 0.1553 -2.4614 1.0303 11 6 -0.4762 -3.6670 1.2346 12 7 -0.0094 -4.7802 0.6982 13 6 1.0766 -4.7995 -0.0550 14 9 1.5045 -5.9701 -0.5764 15 6 1.7799 -3.6402 -0.3165 16 6 3.0175 -3.6717 -1.1759 17 9 3.0056 -4.8244 -1.9686 18 9 3.0429 -2.5403 -1.9984 19 1 -0.4849 0.8401 0.0004 20 1 -0.2334 -1.5564 1.4732 21 1 -1.3676 -3.7036 1.8433 22 1 3.9021 -3.6778 -0.5390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585252.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -126.326037 kcal Electronic energy + Delta-G solvation = -14554.431531 eV Core-core repulsion = 11466.251974 eV Total energy + Delta-G solvation = -3088.179557 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.23098 -47.68112 -45.98088 -38.38788 -34.37779 -31.65944 -29.79043 -26.70439 -24.92065 -21.80287 -21.16891 -18.11745 -16.73878 -16.57173 -16.00546 -15.92863 -15.21815 -14.98727 -14.78597 -13.69398 -12.95565 -12.86428 -12.60873 -12.38865 -12.13983 -11.94401 -11.55045 -11.49199 -11.36336 -10.83223 -10.41745 -10.01809 -9.68714 -8.41192 -8.35561 -7.77121 -7.11992 -4.93968 2.19988 2.50240 2.91278 2.97367 3.00589 3.68658 4.33973 4.70290 4.87355 5.12698 5.27939 5.65673 5.90622 5.99335 6.40604 6.61072 6.84687 6.94472 7.17970 7.49186 7.73612 8.08842 8.34309 8.40009 9.05420 9.79878 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.034444 B = 0.013003 C = 0.009791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.716539 B = 2152.885084 C = 2859.141025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.427 4.427 8 H 0.092 0.908 9 C 0.163 3.837 10 C -0.210 4.210 11 C 0.116 3.884 12 N -0.603 5.603 13 C 0.344 3.656 14 F -0.131 7.131 15 C -0.362 4.362 16 C 0.340 3.660 17 F -0.212 7.212 18 F -0.196 7.196 19 H 0.289 0.711 20 H 0.136 0.864 21 H 0.136 0.864 22 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 1.155 1.061 3.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.146 4.146 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.457 4.457 8 H 0.110 0.890 9 C 0.155 3.845 10 C -0.232 4.232 11 C -0.031 4.031 12 N -0.323 5.323 13 C 0.189 3.811 14 F -0.111 7.111 15 C -0.369 4.369 16 C 0.285 3.715 17 F -0.194 7.194 18 F -0.177 7.177 19 H 0.100 0.900 20 H 0.154 0.846 21 H 0.153 0.847 22 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.581 0.502 1.171 2.878 hybrid contribution 0.655 1.302 -0.423 1.517 sum 3.235 1.804 0.748 3.779 Atomic orbital electron populations 1.69732 1.07854 1.30276 1.32062 1.26060 0.94948 1.02026 0.91581 0.86014 0.80950 0.79622 0.78904 1.17916 1.19458 1.19353 1.19818 0.96689 0.89719 1.39442 0.88988 1.17358 0.90379 0.90466 0.86261 1.22243 0.99840 0.98157 1.02980 1.21846 0.97639 0.87421 0.96209 1.66794 1.15145 1.32672 1.17716 1.17518 0.91092 0.79715 0.92738 1.91515 1.88218 1.47281 1.84042 1.20776 1.05856 0.95670 1.14643 1.19713 0.98080 0.70496 0.83176 1.92937 1.97898 1.51218 1.77332 1.92972 1.97709 1.52047 1.74962 0.90020 0.84603 0.84697 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.16 10.94 55.55 0.61 -17.55 14 2 C 0.08 1.72 5.28 -17.34 -0.09 1.62 14 3 Si 0.92 17.03 29.57 -169.99 -5.03 12.00 14 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 14 7 C -0.43 -10.29 7.46 -37.65 -0.28 -10.57 14 8 H 0.09 2.13 6.76 -52.49 -0.35 1.77 14 9 C 0.16 4.08 5.54 -106.53 -0.59 3.49 14 10 C -0.21 -5.02 8.76 -38.71 -0.34 -5.36 14 11 C 0.12 2.63 11.16 -17.67 -0.20 2.44 14 12 N -0.60 -14.78 10.35 -13.77 -0.14 -14.92 14 13 C 0.34 8.47 8.28 -17.46 -0.14 8.33 14 14 F -0.13 -3.09 15.16 2.25 0.03 -3.06 14 15 C -0.36 -8.76 5.80 -103.66 -0.60 -9.36 14 16 C 0.34 7.30 5.20 36.01 0.19 7.48 14 17 F -0.21 -4.61 15.17 2.25 0.03 -4.57 14 18 F -0.20 -4.44 14.90 2.25 0.03 -4.41 14 19 H 0.29 6.05 8.29 -40.82 -0.34 5.71 14 20 H 0.14 3.21 6.36 -52.49 -0.33 2.88 14 21 H 0.14 2.59 8.06 -52.48 -0.42 2.16 14 22 H 0.10 1.75 8.14 -51.93 -0.42 1.33 14 LS Contribution 212.49 15.07 3.20 3.20 Total: -1.00 -26.69 212.49 -3.98 -30.68 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -0.67 Total: 0.57 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.06 Total: -1.94 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.47 Total: -32.47 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 0.10 Total: -12.04 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -26.69 -3.98 -30.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585252.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.649 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds