Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99746 * 3 2 1 6 6 H 1.48499 * 109.47104 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.33400 * 125.19713 * 99.99556 * 12 9 7 14 14 C 1.38477 * 114.91314 * 180.02562 * 13 12 9 15 15 Cl 1.73604 * 122.54911 * 179.97438 * 14 13 12 16 16 C 1.33447 * 114.89890 * 359.97438 * 14 13 12 17 17 S 1.75876 * 109.59566 * 359.74191 * 16 14 13 18 18 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 19 19 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 20 20 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 21 21 H 1.08002 * 122.54393 * 359.97438 * 13 12 9 22 22 H 1.07998 * 125.19409 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5862 -4.3520 1.0741 14 6 3.5046 -5.3594 0.8307 15 17 4.1042 -6.3996 2.0846 16 6 3.8937 -5.4697 -0.4410 17 16 3.0728 -4.2580 -1.4162 18 1 -0.4850 0.8400 -0.0004 19 1 0.9652 -2.5259 -2.0381 20 1 -0.1571 -3.4138 -1.1907 21 1 2.1888 -4.1535 2.0585 22 1 4.6014 -6.1949 -0.8147 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238588272.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 4.348158 kcal Electronic energy + Delta-G solvation = -10305.597782 eV Core-core repulsion = 8205.261446 eV Total energy + Delta-G solvation = -2100.336337 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.002 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.22365 -37.35009 -36.01749 -33.53714 -30.14656 -27.91235 -25.26360 -22.93289 -20.26912 -18.68472 -18.09745 -16.84228 -16.50992 -16.02058 -14.82754 -14.48420 -14.41500 -14.04199 -13.76136 -13.05917 -12.79555 -12.70148 -12.29645 -12.19084 -11.82289 -11.67604 -11.27951 -10.57992 -9.59998 -9.35469 -9.01687 -8.02137 -6.24185 0.01123 0.42544 0.85962 1.43842 1.45089 1.53871 1.61774 1.68028 2.46416 3.22708 3.98209 4.27227 4.34736 4.57322 4.91225 5.11889 5.24738 5.43883 5.72150 6.06564 6.56316 7.00055 7.15623 7.48569 9.01458 Molecular weight = 217.00amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.008543 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.525983 B = 3276.834421 C = 3463.684367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.048 0.952 9 C 0.286 3.714 10 H 0.027 0.973 11 N -0.816 5.816 12 C -0.166 4.166 13 C -0.172 4.172 14 C -0.043 4.043 15 Cl -0.053 7.053 16 C -0.227 4.227 17 S 0.150 5.850 18 H 0.258 0.742 19 H 0.324 0.676 20 H 0.316 0.684 21 H 0.137 0.863 22 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -10.210 -1.118 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.067 0.933 9 C 0.175 3.825 10 H 0.045 0.955 11 N -0.343 5.343 12 C -0.286 4.286 13 C -0.201 4.201 14 C -0.083 4.083 15 Cl -0.025 7.025 16 C -0.363 4.363 17 S 0.412 5.588 18 H 0.067 0.933 19 H 0.136 0.864 20 H 0.128 0.872 21 H 0.155 0.845 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.277 -9.136 -2.265 11.314 hybrid contribution 0.815 -0.370 1.607 1.839 sum 7.092 -9.506 -0.659 11.879 Atomic orbital electron populations 1.70205 1.06983 1.26665 1.47394 1.25641 0.95433 1.01736 0.93757 0.85738 0.78740 0.79904 0.78237 1.20061 1.20886 1.19678 1.21086 0.92166 0.90645 1.54591 0.93336 1.17538 0.86592 0.87707 0.90712 0.95541 1.58962 1.28196 1.43407 1.03785 1.26457 1.03785 1.01975 0.96398 1.19901 1.02003 0.97746 1.00478 1.19783 1.01181 0.97102 0.90249 1.98323 1.86930 1.65194 1.52070 1.25742 1.08648 1.06496 0.95421 1.84006 1.38356 1.26389 1.10081 0.93324 0.86368 0.87210 0.84478 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.24 12.77 21.45 0.27 -49.96 14 2 C 0.04 2.11 5.39 84.65 0.46 2.57 14 3 Si 0.95 43.03 29.54 68.60 2.03 45.05 14 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 14 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 14 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 7 C -0.55 -29.31 8.71 25.60 0.22 -29.09 14 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 9 C 0.29 13.87 3.05 43.42 0.13 14.00 14 10 H 0.03 1.45 8.12 -2.39 -0.02 1.43 14 11 N -0.82 -37.06 8.46 -174.95 -1.48 -38.54 14 12 C -0.17 -6.68 5.38 24.59 0.13 -6.55 14 13 C -0.17 -6.42 9.93 21.23 0.21 -6.21 14 14 C -0.04 -1.37 6.27 21.24 0.13 -1.24 14 15 Cl -0.05 -1.46 29.11 -2.72 -0.08 -1.54 14 16 C -0.23 -6.45 11.08 66.73 0.74 -5.71 14 17 S 0.15 4.83 22.53 -56.49 -1.27 3.56 14 18 H 0.26 14.10 8.31 -92.71 -0.77 13.33 14 19 H 0.32 13.93 8.31 -89.70 -0.75 13.18 14 20 H 0.32 12.71 9.06 -89.69 -0.81 11.90 14 21 H 0.14 5.14 8.06 -2.91 -0.02 5.12 14 22 H 0.20 4.21 8.06 -2.91 -0.02 4.18 14 Total: -1.00 -57.94 231.19 1.20 -56.74 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.30 Total: 16.90 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 2.03 Total: -32.21 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -1.21 Total: -88.51 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.27 Total: 3.56 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -57.94 1.20 -56.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588272.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.088 kcal (2) G-P(sol) polarization free energy of solvation -57.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds