Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29472 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99983 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00412 * 3 2 1 6 6 H 1.48507 * 109.46754 * 150.00243 * 3 2 1 7 7 C 1.46768 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99544 * 179.97438 * 7 2 1 9 9 C 1.43205 * 120.00108 * 359.97438 * 7 2 1 10 10 C 3.57352 * 80.83196 * 180.02562 * 2 1 3 11 11 C 4.93827 * 74.91172 * 180.02562 * 2 1 3 12 12 C 1.40670 * 120.23635 * 272.63584 * 11 10 9 13 13 C 1.37637 * 119.74806 * 179.79088 * 12 11 10 14 14 C 1.38626 * 120.24304 * 0.46596 * 13 12 11 15 15 N 1.48016 * 119.75809 * 179.76213 * 14 13 12 16 16 O 1.31691 * 120.00245 * 180.02562 * 15 14 13 17 17 O 1.31706 * 119.99535 * 0.02718 * 15 14 13 18 18 C 1.38633 * 120.48843 * 359.78772 * 14 13 12 19 19 C 1.37626 * 120.24916 * 359.97438 * 18 14 13 20 20 H 0.97004 * 119.99298 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12953 * 0.02616 * 12 11 10 22 22 H 1.07997 * 119.87703 * 180.21365 * 13 12 11 23 23 H 1.08005 * 119.87219 * 179.97438 * 18 14 13 24 24 H 1.07997 * 120.12898 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6177 0.0000 4 1 2.4762 2.0464 -1.4001 5 1 1.4263 2.6527 0.7001 6 1 3.5263 1.4400 0.7000 7 6 2.0285 -1.2711 -0.0006 8 1 3.1084 -1.2711 -0.0010 9 6 1.3124 -2.5113 -0.0006 10 6 0.7253 -3.5279 -0.0016 11 6 0.0093 -4.7680 -0.0021 12 6 -0.3936 -5.3539 1.2116 13 6 -1.0851 -6.5439 1.1992 14 6 -1.3764 -7.1697 -0.0030 15 7 -2.1160 -8.4518 -0.0036 16 8 -2.3948 -9.0506 -1.1429 17 8 -2.4954 -8.9936 1.1353 18 6 -0.9795 -6.6038 -1.2048 19 6 -0.2913 -5.4120 -1.2161 20 1 -0.4849 0.8401 0.0004 21 1 -0.1645 -4.8700 2.1496 22 1 -1.3984 -6.9938 2.1296 23 1 -1.2113 -7.1001 -2.1356 24 1 0.0173 -4.9731 -2.1534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238591150.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = 76.736154 kcal Electronic energy + Delta-G solvation = -12532.963211 eV Core-core repulsion = 9995.445832 eV Total energy + Delta-G solvation = -2537.517379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67440 -37.85591 -34.15396 -33.87414 -32.62902 -31.12519 -30.21657 -26.89165 -25.12579 -22.65055 -22.10969 -19.05995 -18.40942 -17.76498 -16.84737 -15.69196 -15.37397 -14.87791 -14.47079 -13.67091 -13.59019 -12.90789 -12.51548 -12.00581 -11.54382 -11.45349 -11.31460 -11.07412 -10.85458 -10.59728 -10.46724 -10.06183 -9.96790 -9.16832 -8.97376 -7.84942 -7.08486 -4.84922 -0.42001 1.33065 1.35506 1.47206 2.79640 2.90580 2.94340 3.40305 3.70402 3.83046 4.66344 4.71794 4.90546 4.97158 5.06443 5.36856 5.44151 5.44635 5.95381 6.06373 6.10660 6.22900 6.72200 6.72890 6.81009 7.07120 7.68617 8.15745 8.35903 9.33493 9.93985 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.083497 B = 0.004728 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.262470 B = 5920.397418 C = 6029.023044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.083 3.917 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.482 4.482 8 H 0.104 0.896 9 C 0.145 3.855 10 C -0.470 4.470 11 C 0.201 3.799 12 C -0.136 4.136 13 C -0.041 4.041 14 C -0.050 4.050 15 N 0.000 5.000 16 O -0.200 6.200 17 O -0.201 6.201 18 C -0.041 4.041 19 C -0.136 4.136 20 H 0.289 0.711 21 H 0.146 0.854 22 H 0.148 0.852 23 H 0.148 0.852 24 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 -3.636 -0.003 3.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.139 4.139 3 Si 0.756 3.244 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.122 0.878 9 C 0.144 3.856 10 C -0.472 4.472 11 C 0.200 3.800 12 C -0.155 4.155 13 C -0.060 4.060 14 C -0.137 4.137 15 N 0.471 4.529 16 O -0.389 6.389 17 O -0.389 6.389 18 C -0.060 4.060 19 C -0.155 4.155 20 H 0.101 0.899 21 H 0.164 0.836 22 H 0.166 0.834 23 H 0.166 0.834 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.086 -3.002 0.001 3.003 hybrid contribution -0.083 0.348 -0.006 0.358 sum 0.003 -2.654 -0.005 2.654 Atomic orbital electron populations 1.69042 1.08728 1.30719 1.33145 1.27310 0.94545 1.01084 0.90958 0.85918 0.80246 0.78612 0.79606 1.18959 1.19904 1.17988 1.19485 0.92856 0.84012 1.54812 0.87845 1.19951 0.87157 0.88628 0.89875 1.17690 1.04945 0.95678 1.28920 1.16707 0.84687 0.87266 0.91346 1.21708 0.99819 0.94474 0.99464 1.20923 0.94363 0.94183 0.96526 1.20395 1.09335 0.86847 0.97152 1.50475 0.97593 1.02550 1.02257 1.96227 1.62313 1.65060 1.15305 1.96230 1.58291 1.69038 1.15360 1.20922 0.93890 0.94669 0.96525 1.21700 1.00195 0.94159 0.99435 0.89873 0.83621 0.83438 0.83439 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.94 13.33 56.00 0.75 -19.20 14 2 C 0.08 1.98 5.68 -15.10 -0.09 1.90 14 3 Si 0.93 17.20 29.65 -169.99 -5.04 12.16 14 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 14 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 14 7 C -0.48 -12.17 9.89 -34.21 -0.34 -12.51 14 8 H 0.10 2.42 7.94 -52.49 -0.42 2.00 14 9 C 0.15 3.79 13.16 -38.84 -0.51 3.28 14 10 C -0.47 -11.26 13.26 -38.84 -0.52 -11.77 14 11 C 0.20 3.89 5.79 -106.13 -0.62 3.28 14 12 C -0.14 -2.27 9.81 -38.88 -0.38 -2.65 14 13 C -0.04 -0.62 9.55 -39.66 -0.38 -1.00 14 14 C -0.05 -0.81 6.90 -79.66 -0.55 -1.36 14 15 N 0.00 0.00 4.98 34.10 0.17 0.17 14 16 O -0.20 -3.67 19.13 -31.56 -0.60 -4.27 14 17 O -0.20 -3.68 19.13 -31.57 -0.60 -4.28 14 18 C -0.04 -0.62 9.55 -39.66 -0.38 -1.00 14 19 C -0.14 -2.27 9.81 -38.89 -0.38 -2.65 14 20 H 0.29 6.47 8.27 -40.82 -0.34 6.13 14 21 H 0.15 2.25 8.06 -52.49 -0.42 1.83 14 22 H 0.15 1.96 7.56 -52.49 -0.40 1.57 14 23 H 0.15 1.96 7.56 -52.48 -0.40 1.56 14 24 H 0.15 2.24 8.06 -52.49 -0.42 1.81 14 LS Contribution 248.39 15.07 3.74 3.74 Total: -1.00 -27.44 248.39 -6.91 -34.35 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -1.19 Total: 1.82 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -4.14 Total: -24.49 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.92 Total: -19.03 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.21 Total: -8.56 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.04 Total: 12.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.44 -6.91 -34.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591150.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.090 kcal (2) G-P(sol) polarization free energy of solvation -27.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds