Wall clock time and date at job start Mon Mar 30 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29472 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99983 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00412 * 3 2 1 6 6 H 1.48507 * 109.46754 * 150.00243 * 3 2 1 7 7 C 1.46768 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99544 * 179.97438 * 7 2 1 9 9 C 1.43205 * 120.00108 * 359.97438 * 7 2 1 10 10 C 3.57352 * 80.83196 * 180.02562 * 2 1 3 11 11 C 4.93827 * 74.91172 * 180.02562 * 2 1 3 12 12 C 1.40670 * 120.23635 * 272.63584 * 11 10 9 13 13 C 1.37637 * 119.74806 * 179.79088 * 12 11 10 14 14 C 1.38626 * 120.24304 * 0.46596 * 13 12 11 15 15 N 1.48016 * 119.75809 * 179.76213 * 14 13 12 16 16 O 1.31691 * 120.00245 * 180.02562 * 15 14 13 17 17 O 1.31706 * 119.99535 * 0.02718 * 15 14 13 18 18 C 1.38633 * 120.48843 * 359.78772 * 14 13 12 19 19 C 1.37626 * 120.24916 * 359.97438 * 18 14 13 20 20 H 0.97004 * 119.99298 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.12953 * 0.02616 * 12 11 10 22 22 H 1.07997 * 119.87703 * 180.21365 * 13 12 11 23 23 H 1.08005 * 119.87219 * 179.97438 * 18 14 13 24 24 H 1.07997 * 120.12898 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6177 0.0000 4 1 2.4762 2.0464 -1.4001 5 1 1.4263 2.6527 0.7001 6 1 3.5263 1.4400 0.7000 7 6 2.0285 -1.2711 -0.0006 8 1 3.1084 -1.2711 -0.0010 9 6 1.3124 -2.5113 -0.0006 10 6 0.7253 -3.5279 -0.0016 11 6 0.0093 -4.7680 -0.0021 12 6 -0.3936 -5.3539 1.2116 13 6 -1.0851 -6.5439 1.1992 14 6 -1.3764 -7.1697 -0.0030 15 7 -2.1160 -8.4518 -0.0036 16 8 -2.3948 -9.0506 -1.1429 17 8 -2.4954 -8.9936 1.1353 18 6 -0.9795 -6.6038 -1.2048 19 6 -0.2913 -5.4120 -1.2161 20 1 -0.4849 0.8401 0.0004 21 1 -0.1645 -4.8700 2.1496 22 1 -1.3984 -6.9938 2.1296 23 1 -1.2113 -7.1001 -2.1356 24 1 0.0173 -4.9731 -2.1534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591150.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:52 Heat of formation + Delta-G solvation = 62.894415 kcal Electronic energy + Delta-G solvation = -12533.563434 eV Core-core repulsion = 9995.445832 eV Total energy + Delta-G solvation = -2538.117602 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05547 -39.27068 -35.66298 -35.58170 -34.25547 -32.45058 -31.85503 -28.48234 -26.79490 -23.97038 -23.56636 -20.77204 -19.78982 -19.16986 -18.45470 -17.09424 -17.04543 -16.25737 -15.80761 -15.21872 -14.84345 -14.35482 -14.00042 -13.69835 -13.15999 -13.09397 -12.67098 -12.49912 -12.28164 -12.03545 -11.90479 -11.74007 -11.58481 -10.77826 -10.44857 -9.52691 -8.84706 -6.73596 -1.85564 -0.08431 0.02938 0.07207 1.31903 1.39103 1.55279 1.95713 2.10224 2.17598 3.11531 3.16397 3.41336 3.45606 3.60869 3.93084 4.05963 4.14797 4.65517 4.65592 4.74767 4.83401 4.99217 5.33437 5.38687 5.63506 5.90730 6.30924 6.52952 7.47553 8.20580 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.083497 B = 0.004728 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.262470 B = 5920.397418 C = 6029.023044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.040 3.960 3 Si 1.013 2.987 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.109 0.891 9 C 0.072 3.928 10 C -0.461 4.461 11 C 0.160 3.840 12 C -0.126 4.126 13 C -0.028 4.028 14 C -0.048 4.048 15 N -0.002 5.002 16 O -0.204 6.204 17 O -0.205 6.205 18 C -0.028 4.028 19 C -0.126 4.126 20 H 0.299 0.701 21 H 0.155 0.845 22 H 0.173 0.827 23 H 0.174 0.826 24 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -3.933 -0.028 3.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.178 4.178 3 Si 0.831 3.169 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.172 1.172 7 C -0.546 4.546 8 H 0.126 0.874 9 C 0.070 3.930 10 C -0.464 4.464 11 C 0.159 3.841 12 C -0.145 4.145 13 C -0.047 4.047 14 C -0.136 4.136 15 N 0.469 4.531 16 O -0.393 6.393 17 O -0.393 6.393 18 C -0.047 4.047 19 C -0.145 4.145 20 H 0.111 0.889 21 H 0.173 0.827 22 H 0.191 0.809 23 H 0.191 0.809 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.132 -3.328 -0.022 3.331 hybrid contribution -0.130 0.202 -0.001 0.240 sum -0.262 -3.125 -0.024 3.137 Atomic orbital electron populations 1.69095 1.10588 1.32396 1.34013 1.28456 0.95374 1.04509 0.89472 0.84764 0.78862 0.73216 0.80090 1.17966 1.18805 1.17151 1.19954 0.93534 0.85050 1.56082 0.87376 1.20663 0.90336 0.90470 0.91502 1.18614 1.04079 0.96341 1.27347 1.16936 0.86780 0.86789 0.93604 1.21718 0.99223 0.94670 0.98902 1.21090 0.93103 0.93190 0.97338 1.20669 1.08642 0.86279 0.97973 1.50618 0.97535 1.02784 1.02158 1.96231 1.62437 1.65284 1.15302 1.96234 1.58475 1.69262 1.15362 1.21094 0.92528 0.93763 0.97329 1.21717 0.99643 0.94240 0.98875 0.88898 0.82741 0.80927 0.80891 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.08 13.33 23.26 0.31 -42.77 14 2 C 0.04 1.93 5.68 87.27 0.50 2.42 14 3 Si 1.01 35.04 29.65 68.60 2.03 37.07 14 4 H -0.26 -8.39 7.11 99.48 0.71 -7.69 14 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 14 6 H -0.25 -8.17 7.11 99.48 0.71 -7.47 14 7 C -0.52 -27.19 9.89 25.75 0.25 -26.94 14 8 H 0.11 5.28 7.94 -2.91 -0.02 5.25 14 9 C 0.07 3.92 13.16 30.02 0.39 4.31 14 10 C -0.46 -22.82 13.26 30.02 0.40 -22.43 14 11 C 0.16 6.15 5.79 -20.84 -0.12 6.02 14 12 C -0.13 -4.06 9.81 22.72 0.22 -3.83 14 13 C -0.03 -0.79 9.55 22.22 0.21 -0.58 14 14 C -0.05 -1.44 6.90 36.56 0.25 -1.19 14 15 N 0.00 -0.06 4.98 -46.02 -0.23 -0.29 14 16 O -0.20 -6.91 19.13 3.53 0.07 -6.84 14 17 O -0.21 -6.96 19.13 3.51 0.07 -6.89 14 18 C -0.03 -0.78 9.55 22.22 0.21 -0.57 14 19 C -0.13 -4.02 9.81 22.72 0.22 -3.80 14 20 H 0.30 13.56 8.27 -92.71 -0.77 12.80 14 21 H 0.15 4.64 8.06 -2.91 -0.02 4.61 14 22 H 0.17 4.00 7.56 -2.91 -0.02 3.98 14 23 H 0.17 3.98 7.56 -2.91 -0.02 3.96 14 24 H 0.16 4.61 8.06 -2.91 -0.02 4.59 14 Total: -1.00 -60.17 248.39 6.03 -54.14 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.24 Total: 12.15 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 2.55 Total: -46.58 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.08 Total: -43.05 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.13 Total: -13.74 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -60.17 6.03 -54.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591150.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.034 kcal (2) G-P(sol) polarization free energy of solvation -60.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds