Wall clock time and date at job start Mon Mar 30 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29455 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48499 * 109.46937 * 269.99899 * 3 2 1 5 5 H 1.48503 * 109.47205 * 29.99733 * 3 2 1 6 6 H 1.48503 * 109.47319 * 150.00160 * 3 2 1 7 7 C 1.46771 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99579 * 0.02562 * 7 2 1 9 9 C 1.43198 * 120.00216 * 179.97438 * 7 2 1 10 10 C 3.57350 * 159.16431 * 179.97438 * 2 1 3 11 11 C 4.93825 * 165.08511 * 179.97438 * 2 1 3 12 12 C 1.40690 * 120.23578 * 263.98429 * 11 10 9 13 13 C 1.37616 * 119.74638 * 180.02562 * 12 11 10 14 14 C 1.38645 * 120.24220 * 0.25806 * 13 12 11 15 15 C 1.38607 * 120.49675 * 359.48451 * 14 13 12 16 16 N 1.48016 * 119.88166 * 180.23526 * 15 14 13 17 17 O 1.31698 * 120.00073 * 180.27581 * 16 15 14 18 18 O 1.31702 * 119.99720 * 0.27460 * 16 15 14 19 19 C 1.37648 * 120.23866 * 0.51130 * 15 14 13 20 20 H 0.97001 * 120.00518 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.13060 * 0.04468 * 12 11 10 22 22 H 1.08002 * 119.87451 * 179.97438 * 13 12 11 23 23 H 1.07998 * 119.75171 * 179.74204 * 14 13 12 24 24 H 1.08009 * 120.12728 * 179.76431 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 2.4760 2.0464 -1.4001 5 1 1.4260 2.6527 0.7000 6 1 3.5261 1.4402 0.7000 7 6 2.0284 -1.2711 0.0006 8 1 1.4884 -2.2063 0.0006 9 6 3.4604 -1.2711 0.0000 10 6 4.6344 -1.2711 0.0006 11 6 6.0664 -1.2710 0.0006 12 6 6.7749 -1.1436 1.2094 13 6 8.1510 -1.1443 1.1976 14 6 8.8390 -1.2645 0.0000 15 6 8.1513 -1.3959 -1.1962 16 7 8.8996 -1.5286 -2.4664 17 8 8.2485 -1.6481 -3.6049 18 8 10.2166 -1.5271 -2.4579 19 6 6.7749 -1.3978 -1.2079 20 1 -0.4851 0.8400 0.0004 21 1 6.2409 -1.0460 2.1430 22 1 8.6969 -1.0462 2.1243 23 1 9.9190 -1.2599 -0.0005 24 1 6.2407 -1.4965 -2.1415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591399.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:44 Heat of formation + Delta-G solvation = 65.522480 kcal Electronic energy + Delta-G solvation = -12719.919493 eV Core-core repulsion = 10181.915853 eV Total energy + Delta-G solvation = -2538.003641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.10997 -39.32069 -35.69498 -35.60729 -34.42895 -32.84440 -31.75770 -27.85138 -27.58554 -24.21596 -23.29596 -20.88851 -19.80619 -19.23226 -17.55587 -17.43916 -17.17672 -16.64477 -16.28302 -15.08539 -15.01624 -14.37984 -14.08068 -13.52380 -13.30078 -13.13958 -12.80893 -12.56739 -12.35622 -12.04061 -11.97170 -11.84162 -11.61344 -10.97151 -10.57719 -9.53413 -8.92274 -6.77290 -1.86471 -0.27657 -0.01411 0.09080 1.14817 1.23204 1.36484 1.90881 1.94873 2.08208 2.95295 3.08035 3.33930 3.43633 3.80233 3.88362 3.95983 4.03604 4.53334 4.64291 4.72686 4.94124 5.10647 5.27678 5.45805 5.55631 5.83964 6.22167 6.47231 7.33769 8.07495 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.039269 B = 0.006474 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.854240 B = 4324.169805 C = 4585.543217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.063 3.937 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.244 1.244 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.024 3.976 10 C -0.415 4.415 11 C 0.073 3.927 12 C -0.049 4.049 13 C -0.088 4.088 14 C -0.050 4.050 15 C -0.017 4.017 16 N -0.011 5.011 17 O -0.244 6.244 18 O -0.147 6.147 19 C -0.069 4.069 20 H 0.306 0.694 21 H 0.161 0.839 22 H 0.204 0.796 23 H 0.184 0.816 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 2.649 5.393 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.157 4.157 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.167 1.167 6 H -0.180 1.180 7 C -0.526 4.526 8 H 0.090 0.910 9 C 0.023 3.977 10 C -0.418 4.418 11 C 0.072 3.928 12 C -0.068 4.068 13 C -0.106 4.106 14 C -0.069 4.069 15 C -0.103 4.103 16 N 0.463 4.537 17 O -0.421 6.421 18 O -0.353 6.353 19 C -0.089 4.089 20 H 0.118 0.882 21 H 0.179 0.821 22 H 0.221 0.779 23 H 0.201 0.799 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.112 2.793 5.836 15.524 hybrid contribution -0.385 0.145 -0.997 1.078 sum 13.726 2.938 4.839 14.848 Atomic orbital electron populations 1.68837 1.09553 1.32615 1.34280 1.27853 0.95141 1.03279 0.89411 0.85521 0.80015 0.76285 0.80454 1.18567 1.16691 1.17955 1.19189 0.83994 0.93846 1.55615 0.90953 1.20021 0.91239 0.94494 0.91982 1.18424 0.91121 1.05350 1.26883 1.16144 0.86476 0.98073 0.92142 1.22481 0.95252 0.91298 0.97733 1.21635 0.92549 0.97712 0.98701 1.21708 1.03275 0.93456 0.88502 1.20447 0.91001 1.16756 0.82081 1.50784 1.02948 0.95089 1.04833 1.96311 1.69302 1.59384 1.17127 1.96181 0.89627 1.53646 1.95797 1.21436 0.91263 0.95998 1.00166 0.88190 0.82130 0.77921 0.79881 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.28 13.88 23.26 0.32 -42.96 14 2 C 0.06 3.30 5.70 87.28 0.50 3.79 14 3 Si 0.96 40.13 28.15 68.60 1.93 42.06 14 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 14 5 H -0.24 -8.96 7.11 99.48 0.71 -8.25 14 6 H -0.26 -10.94 7.08 99.48 0.70 -10.24 14 7 C -0.50 -28.26 10.48 25.75 0.27 -27.99 14 8 H 0.07 4.39 8.06 -2.91 -0.02 4.36 14 9 C 0.02 1.29 11.66 30.02 0.35 1.64 14 10 C -0.42 -19.53 13.26 30.02 0.40 -19.13 14 11 C 0.07 2.62 5.79 -20.84 -0.12 2.49 14 12 C -0.05 -1.23 9.81 22.72 0.22 -1.00 14 13 C -0.09 -1.42 10.02 22.22 0.22 -1.20 14 14 C -0.05 -1.00 9.59 22.46 0.22 -0.78 14 15 C -0.02 -0.49 6.87 36.32 0.25 -0.24 14 16 N -0.01 -0.39 4.98 -46.59 -0.23 -0.62 14 17 O -0.24 -9.52 19.14 3.52 0.07 -9.45 14 18 O -0.15 -4.57 19.14 3.51 0.07 -4.51 14 19 C -0.07 -2.40 9.33 22.72 0.21 -2.19 14 20 H 0.31 13.96 8.27 -92.71 -0.77 13.19 14 21 H 0.16 3.47 8.06 -2.91 -0.02 3.45 14 22 H 0.20 1.16 8.06 -2.91 -0.02 1.14 14 23 H 0.18 2.50 7.56 -2.91 -0.02 2.48 14 24 H 0.13 5.04 7.57 -2.91 -0.02 5.02 14 Total: -1.00 -64.94 246.67 5.91 -59.03 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.24 Total: 1.06 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 2.52 Total: -44.62 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.09 Total: -43.58 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.13 Total: -13.96 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.93 Total: 42.06 kcal Total: -64.94 5.91 -59.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591399.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.551 kcal (2) G-P(sol) polarization free energy of solvation -64.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds