Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00263 * 3 2 1 5 5 H 1.48496 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99966 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.37762 * 120.19590 * 264.99872 * 12 9 7 14 14 C 1.38722 * 120.27315 * 179.97438 * 13 12 9 15 15 C 1.37861 * 120.69217 * 359.96908 * 14 13 12 16 16 C 1.38885 * 119.95852 * 0.02991 * 15 14 13 17 17 O 1.34835 * 133.42589 * 179.97438 * 16 15 14 18 18 C 1.34442 * 110.89625 * 180.02562 * 17 16 15 19 19 C 1.33986 * 110.16516 * 0.02562 * 18 17 16 20 20 C 1.39374 * 120.20308 * 84.71916 * 12 9 7 21 21 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 22 22 H 1.00901 * 111.00080 * 296.04737 * 11 9 7 23 23 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 24 24 H 1.08000 * 119.86478 * 359.95273 * 13 12 9 25 25 H 1.07995 * 119.65410 * 180.02562 * 14 13 12 26 26 H 1.08000 * 120.02088 * 180.02562 * 15 14 13 27 27 H 1.08002 * 124.91313 * 180.02562 * 18 17 16 28 28 H 1.08000 * 126.91011 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.6024 -4.2383 -1.1876 14 6 3.5041 -5.2925 -1.1893 15 6 4.0409 -5.7612 -0.0091 16 6 3.6790 -5.1769 1.1977 17 8 4.0243 -5.4090 2.4803 18 6 3.3916 -4.5597 3.3085 19 6 2.6031 -3.7332 2.6082 20 6 2.7691 -4.1061 1.1982 21 1 -0.4850 0.8401 0.0004 22 1 -0.3005 -1.8567 -1.1927 23 1 0.9651 -2.5242 -2.0403 24 1 2.1903 -3.8816 -2.1200 25 1 3.7893 -5.7502 -2.1249 26 1 4.7423 -6.5823 -0.0231 27 1 3.5029 -4.5458 4.3826 28 1 1.9748 -2.9478 3.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595862.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = 23.949418 kcal Electronic energy + Delta-G solvation = -14075.762318 eV Core-core repulsion = 11671.789029 eV Total energy + Delta-G solvation = -2403.973289 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79129 -37.59330 -34.56670 -32.18123 -31.35890 -29.03127 -28.55439 -25.98302 -23.28197 -21.66315 -21.55999 -19.40822 -16.85333 -16.61458 -16.29694 -15.48226 -15.19503 -14.70933 -14.09375 -13.34333 -12.90265 -12.63700 -12.26408 -12.02346 -11.78545 -11.45836 -11.06529 -11.02610 -10.65748 -10.56868 -10.07811 -9.55587 -9.46729 -8.67715 -7.94713 -7.49152 -7.19707 -6.12098 -4.29168 1.59038 2.07138 2.97483 3.21842 3.26868 3.30498 3.34019 4.26581 4.48821 5.07515 5.11397 5.30675 5.60298 5.63641 5.92683 6.00491 6.06826 6.28760 6.52018 6.61149 6.84678 6.94601 7.04481 7.12747 7.34214 7.70121 7.71206 7.79297 8.04809 8.63280 8.88888 9.07349 9.42291 10.85135 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.009873 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.582170 B = 2835.235789 C = 3217.187608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.240 3.760 10 H 0.050 0.950 11 N -0.850 5.850 12 C 0.027 3.973 13 C -0.143 4.143 14 C -0.089 4.089 15 C -0.144 4.144 16 C 0.047 3.953 17 O -0.206 6.206 18 C -0.030 4.030 19 C -0.177 4.177 20 C -0.133 4.133 21 H 0.267 0.733 22 H 0.356 0.644 23 H 0.312 0.688 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.200 0.800 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.054 -7.088 1.680 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.130 3.870 10 H 0.068 0.932 11 N -0.381 5.381 12 C 0.026 3.974 13 C -0.161 4.161 14 C -0.108 4.108 15 C -0.163 4.163 16 C 0.000 4.000 17 O -0.109 6.109 18 C -0.094 4.094 19 C -0.196 4.196 20 C -0.134 4.134 21 H 0.077 0.923 22 H 0.173 0.827 23 H 0.122 0.878 24 H 0.146 0.854 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.216 0.784 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.841 -7.887 2.038 9.476 hybrid contribution 0.779 2.164 -0.040 2.300 sum 5.620 -5.723 1.998 8.267 Atomic orbital electron populations 1.69732 1.05826 1.27372 1.50343 1.25003 0.94943 0.99257 0.94333 0.86561 0.79569 0.82535 0.78827 1.20171 1.21127 1.20137 1.21704 0.93579 0.90739 1.51976 0.92686 1.17958 0.89056 0.88101 0.91870 0.93174 1.59558 1.18434 1.56100 1.03976 1.20031 0.93706 0.93759 0.89894 1.20837 0.99408 0.97423 0.98449 1.20842 0.96760 0.96831 0.96320 1.19598 1.05279 1.03294 0.88135 1.19632 0.98621 0.97906 0.83855 1.83909 1.59702 1.52293 1.14993 1.23710 0.97354 0.92776 0.95555 1.22602 1.03124 1.02154 0.91732 1.19780 1.01179 0.98302 0.94190 0.92349 0.82737 0.87803 0.85440 0.85800 0.86333 0.78352 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 11.54 55.43 0.64 -23.71 15 2 C 0.07 1.79 5.38 -17.82 -0.10 1.70 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.54 -14.52 8.71 -34.44 -0.30 -14.82 15 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.24 6.02 2.88 -70.02 -0.20 5.82 15 10 H 0.05 1.39 8.06 -51.93 -0.42 0.97 15 11 N -0.85 -20.17 8.79 -6.65 -0.06 -20.23 15 12 C 0.03 0.61 5.02 -104.37 -0.52 0.08 15 13 C -0.14 -2.83 9.27 -39.58 -0.37 -3.20 15 14 C -0.09 -1.51 10.01 -39.54 -0.40 -1.91 15 15 C -0.14 -2.49 10.06 -39.48 -0.40 -2.89 15 16 C 0.05 0.91 7.41 -38.48 -0.29 0.63 15 17 O -0.21 -3.72 10.58 3.85 0.04 -3.68 15 18 C -0.03 -0.48 11.96 29.24 0.35 -0.13 15 19 C -0.18 -3.39 10.97 -37.62 -0.41 -3.80 15 20 C -0.13 -2.87 6.16 -105.16 -0.65 -3.52 15 21 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.36 9.01 7.08 -39.29 -0.28 8.73 15 23 H 0.31 6.96 7.22 -39.29 -0.28 6.68 15 24 H 0.13 2.40 6.29 -52.49 -0.33 2.07 15 25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.20 2.16 8.06 -52.49 -0.42 1.74 15 28 H 0.16 2.90 8.06 -52.49 -0.42 2.48 15 LS Contribution 246.53 15.07 3.72 3.72 Total: -1.00 -28.90 246.53 -6.50 -35.40 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -2.54 Total: 14.67 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.28 Total: -22.03 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.58 Total: -43.94 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.90 -6.50 -35.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595862.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds