Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00263 * 3 2 1 5 5 H 1.48496 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99966 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.37762 * 120.19590 * 264.99872 * 12 9 7 14 14 C 1.38722 * 120.27315 * 179.97438 * 13 12 9 15 15 C 1.37861 * 120.69217 * 359.96908 * 14 13 12 16 16 C 1.38885 * 119.95852 * 0.02991 * 15 14 13 17 17 O 1.34835 * 133.42589 * 179.97438 * 16 15 14 18 18 C 1.34442 * 110.89625 * 180.02562 * 17 16 15 19 19 C 1.33986 * 110.16516 * 0.02562 * 18 17 16 20 20 C 1.39374 * 120.20308 * 84.71916 * 12 9 7 21 21 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 22 22 H 1.00901 * 111.00080 * 296.04737 * 11 9 7 23 23 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 24 24 H 1.08000 * 119.86478 * 359.95273 * 13 12 9 25 25 H 1.07995 * 119.65410 * 180.02562 * 14 13 12 26 26 H 1.08000 * 120.02088 * 180.02562 * 15 14 13 27 27 H 1.08002 * 124.91313 * 180.02562 * 18 17 16 28 28 H 1.08000 * 126.91011 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.6024 -4.2383 -1.1876 14 6 3.5041 -5.2925 -1.1893 15 6 4.0409 -5.7612 -0.0091 16 6 3.6790 -5.1769 1.1977 17 8 4.0243 -5.4090 2.4803 18 6 3.3916 -4.5597 3.3085 19 6 2.6031 -3.7332 2.6082 20 6 2.7691 -4.1061 1.1982 21 1 -0.4850 0.8401 0.0004 22 1 -0.3005 -1.8567 -1.1927 23 1 0.9651 -2.5242 -2.0403 24 1 2.1903 -3.8816 -2.1200 25 1 3.7893 -5.7502 -2.1249 26 1 4.7423 -6.5823 -0.0231 27 1 3.5029 -4.5458 4.3826 28 1 1.9748 -2.9478 3.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595862.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = 5.067278 kcal Electronic energy + Delta-G solvation = -14076.581109 eV Core-core repulsion = 11671.789029 eV Total energy + Delta-G solvation = -2404.792080 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.20544 -39.13076 -36.38991 -33.80389 -33.14447 -30.53837 -30.09607 -27.96535 -24.97395 -23.20651 -23.01267 -21.00206 -18.63297 -18.30811 -17.80056 -16.91135 -16.77842 -16.44301 -15.84135 -14.94154 -14.76923 -14.07352 -13.83043 -13.63500 -13.45089 -13.12002 -12.90038 -12.70384 -12.47884 -12.25259 -11.96554 -11.30839 -10.97581 -10.70805 -9.40289 -9.29460 -8.88118 -8.13909 -6.41309 0.17349 0.56658 1.35703 1.36161 1.44889 1.57866 1.99758 2.33495 2.94989 3.01585 3.76990 3.89780 4.22330 4.28332 4.43535 4.53259 4.67617 4.79788 4.86265 5.12501 5.19993 5.42643 5.53965 5.57325 5.65070 5.84754 5.94738 6.04764 6.35028 6.60099 6.88121 7.08078 7.34692 8.79176 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.009873 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.582170 B = 2835.235789 C = 3217.187608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.040 0.960 9 C 0.249 3.751 10 H 0.009 0.991 11 N -0.842 5.842 12 C -0.018 4.018 13 C -0.147 4.147 14 C -0.085 4.085 15 C -0.130 4.130 16 C 0.028 3.972 17 O -0.203 6.203 18 C 0.010 3.990 19 C -0.228 4.228 20 C -0.163 4.163 21 H 0.269 0.731 22 H 0.346 0.654 23 H 0.320 0.680 24 H 0.130 0.870 25 H 0.169 0.831 26 H 0.158 0.842 27 H 0.254 0.746 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -8.197 1.655 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.138 3.862 10 H 0.027 0.973 11 N -0.371 5.371 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.103 4.103 15 C -0.149 4.149 16 C -0.019 4.019 17 O -0.106 6.106 18 C -0.053 4.053 19 C -0.247 4.247 20 C -0.164 4.164 21 H 0.078 0.922 22 H 0.160 0.840 23 H 0.131 0.869 24 H 0.148 0.852 25 H 0.187 0.813 26 H 0.176 0.824 27 H 0.270 0.730 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.702 -9.011 2.004 11.408 hybrid contribution 0.222 2.426 0.015 2.436 sum 6.924 -6.585 2.019 9.766 Atomic orbital electron populations 1.69830 1.06872 1.28147 1.50554 1.25710 0.95748 1.02190 0.93893 0.85614 0.78441 0.78887 0.78712 1.19684 1.20290 1.20163 1.21848 0.92921 0.92203 1.52388 0.94159 1.17660 0.88932 0.89100 0.90473 0.97331 1.59511 1.18136 1.55337 1.04100 1.19923 0.95369 0.94743 0.91823 1.21038 0.99926 0.98131 0.97491 1.21268 0.95240 0.95503 0.98252 1.20150 1.04478 1.03148 0.87086 1.19992 0.98836 0.97917 0.85130 1.83937 1.59574 1.52415 1.14633 1.24594 0.93871 0.89738 0.97141 1.22694 1.05936 1.04341 0.91729 1.20148 1.02002 0.99467 0.94817 0.92169 0.83951 0.86900 0.85192 0.81339 0.82423 0.72991 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.09 11.54 21.45 0.25 -50.84 15 2 C 0.03 1.36 5.38 84.66 0.46 1.82 15 3 Si 0.96 43.32 29.54 68.60 2.03 45.34 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 7 C -0.55 -30.86 8.71 25.60 0.22 -30.64 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 15 9 C 0.25 13.09 2.88 43.43 0.12 13.21 15 10 H 0.01 0.52 8.06 -2.39 -0.02 0.50 15 11 N -0.84 -41.38 8.79 -174.96 -1.54 -42.91 15 12 C -0.02 -0.83 5.02 -19.70 -0.10 -0.93 15 13 C -0.15 -5.78 9.27 22.27 0.21 -5.58 15 14 C -0.08 -2.63 10.01 22.30 0.22 -2.40 15 15 C -0.13 -4.07 10.06 22.34 0.22 -3.84 15 16 C 0.03 1.05 7.41 22.98 0.17 1.22 15 17 O -0.20 -6.81 10.58 -9.13 -0.10 -6.91 15 18 C 0.01 0.30 11.96 66.85 0.80 1.10 15 19 C -0.23 -8.89 10.97 23.54 0.26 -8.63 15 20 C -0.16 -7.13 6.16 -20.21 -0.12 -7.26 15 21 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 22 H 0.35 18.15 7.08 -89.69 -0.63 17.52 15 23 H 0.32 14.64 7.22 -89.69 -0.65 13.99 15 24 H 0.13 4.86 6.29 -2.91 -0.02 4.84 15 25 H 0.17 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 27 H 0.25 4.43 8.06 -2.91 -0.02 4.40 15 28 H 0.14 5.77 8.06 -2.91 -0.02 5.75 15 Total: -1.00 -64.65 246.53 3.02 -61.64 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.09 Total: 35.60 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 2.46 Total: -41.92 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -1.29 Total: -93.75 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.10 Total: -6.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.65 3.02 -61.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595862.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.706 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds