Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.33406 * 122.54149 * 265.02623 * 12 9 7 14 14 S 1.75884 * 109.60483 * 180.02562 * 13 12 9 15 15 C 1.75877 * 90.98314 * 359.97438 * 14 13 12 16 16 C 1.33443 * 109.59635 * 359.73121 * 15 14 13 17 17 Cl 1.73606 * 122.54741 * 180.24086 * 16 15 14 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 20 20 H 1.00899 * 110.99979 * 183.95580 * 11 9 7 21 21 H 1.08001 * 125.19649 * 359.95663 * 13 12 9 22 22 H 1.07997 * 125.20005 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.6182 -4.2510 -1.1353 14 16 3.7589 -5.5331 -0.7501 15 6 3.6425 -5.1628 0.9653 16 6 2.8005 -4.1436 1.1470 17 17 2.4417 -3.4972 2.7177 18 1 -0.4849 0.8401 0.0041 19 1 0.9559 -2.5207 -2.0431 20 1 -0.1625 -3.4108 -1.1930 21 1 2.2821 -3.9945 -2.1291 22 1 4.1750 -5.6780 1.7509 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238599324.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = 8.810277 kcal Electronic energy + Delta-G solvation = -10559.326225 eV Core-core repulsion = 8459.183380 eV Total energy + Delta-G solvation = -2100.142845 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.002 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.63341 -37.12054 -35.45137 -33.32027 -29.74978 -28.31336 -25.53989 -22.68871 -19.77222 -18.61548 -18.44982 -16.84100 -16.24793 -15.96420 -14.77555 -14.63205 -14.33283 -13.88569 -13.54954 -13.05845 -12.72670 -12.66239 -12.25960 -12.22646 -11.66016 -11.57217 -11.21486 -10.52151 -9.63560 -9.11283 -8.90257 -7.94131 -6.13534 -0.00691 0.49135 0.88686 1.42090 1.44365 1.53997 1.68488 1.81612 2.50608 3.29706 3.97757 4.34869 4.49168 4.54417 4.91006 5.18920 5.24711 5.64214 5.79692 6.22223 6.69229 7.13630 7.28678 7.57290 9.09296 Molecular weight = 217.00amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.011134 C = 0.009973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.545036 B = 2514.188136 C = 2806.923505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.041 0.959 9 C 0.279 3.721 10 H 0.020 0.980 11 N -0.819 5.819 12 C -0.120 4.120 13 C -0.228 4.228 14 S 0.164 5.836 15 C -0.216 4.216 16 C -0.053 4.053 17 Cl -0.061 7.061 18 H 0.254 0.746 19 H 0.324 0.676 20 H 0.312 0.688 21 H 0.172 0.828 22 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -10.651 -0.317 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.059 0.941 9 C 0.167 3.833 10 H 0.038 0.962 11 N -0.347 5.347 12 C -0.134 4.134 13 C -0.363 4.363 14 S 0.427 5.573 15 C -0.352 4.352 16 C -0.094 4.094 17 Cl -0.032 7.032 18 H 0.063 0.937 19 H 0.137 0.863 20 H 0.124 0.876 21 H 0.189 0.811 22 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.110 -10.876 -0.782 13.017 hybrid contribution -0.061 1.328 0.881 1.594 sum 7.048 -9.549 0.099 11.869 Atomic orbital electron populations 1.70228 1.06841 1.26083 1.48395 1.25577 0.95334 1.01388 0.94255 0.85800 0.79146 0.80909 0.77428 1.19644 1.20706 1.20928 1.20968 0.91659 0.90777 1.53147 0.94118 1.17591 0.87109 0.88387 0.90229 0.96224 1.58955 1.28353 1.43174 1.04180 1.20315 1.01742 0.99757 0.91545 1.25336 1.05779 1.03092 1.02115 1.83593 1.43289 1.33113 0.97345 1.25815 1.05044 1.02396 1.01982 1.19911 1.02721 0.98866 0.87889 1.98327 1.94197 1.86363 1.24359 0.93694 0.86316 0.87619 0.81086 0.78861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.63 12.76 21.45 0.27 -51.36 14 2 C 0.04 2.12 5.39 84.66 0.46 2.57 14 3 Si 0.94 44.32 29.54 68.60 2.03 46.35 14 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 14 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 14 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 14 7 C -0.53 -28.88 8.71 25.60 0.22 -28.66 14 8 H 0.04 2.28 7.74 -2.91 -0.02 2.25 14 9 C 0.28 13.79 2.58 43.42 0.11 13.91 14 10 H 0.02 1.11 7.57 -2.38 -0.02 1.10 14 11 N -0.82 -37.80 8.20 -174.95 -1.43 -39.24 14 12 C -0.12 -4.88 4.90 -20.90 -0.10 -4.98 14 13 C -0.23 -7.71 10.34 66.73 0.69 -7.02 14 14 S 0.16 4.26 23.34 -56.49 -1.32 2.94 14 15 C -0.22 -6.32 11.08 66.73 0.74 -5.58 14 16 C -0.05 -1.99 6.26 21.24 0.13 -1.86 14 17 Cl -0.06 -2.33 28.12 -2.72 -0.08 -2.41 14 18 H 0.25 14.28 8.31 -92.71 -0.77 13.50 14 19 H 0.32 13.91 7.57 -89.70 -0.68 13.23 14 20 H 0.31 12.82 9.06 -89.70 -0.81 12.00 14 21 H 0.17 5.34 6.89 -2.91 -0.02 5.32 14 22 H 0.19 4.39 8.06 -2.91 -0.02 4.37 14 Total: -1.00 -61.66 227.73 1.50 -60.16 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.23 Total: 15.18 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.25 Total: -31.62 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -1.16 Total: -90.60 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.32 Total: 2.94 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -61.66 1.50 -60.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599324.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.974 kcal (2) G-P(sol) polarization free energy of solvation -61.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds