Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99999 * 2 1 4 4 H 1.08990 * 115.56356 * 334.30024 * 3 2 1 5 5 C 1.53006 * 117.49778 * 188.60564 * 3 2 1 6 6 C 1.52997 * 59.99924 * 252.51540 * 5 3 2 7 7 N 1.46908 * 117.49626 * 252.50902 * 6 5 3 8 8 P 1.82305 * 117.49976 * 107.49512 * 6 5 3 9 9 O 1.47998 * 109.46862 * 231.37295 * 8 6 5 10 10 O 1.60999 * 109.47071 * 351.37123 * 8 6 5 11 11 C 1.81395 * 109.47177 * 111.37254 * 8 6 5 12 12 H 1.08005 * 120.00039 * 0.02562 * 11 8 6 13 13 C 1.37877 * 119.99884 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99896 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99942 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47331 * 120.00220 * 15 13 11 18 18 H 1.48498 * 109.46784 * 239.99961 * 15 13 11 19 19 H 1.07997 * 119.99693 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.00205 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.99566 * 180.02562 * 2 1 3 22 22 H 1.08999 * 117.49661 * 0.02562 * 5 3 2 23 23 H 1.08999 * 117.49552 * 144.99862 * 5 3 2 24 24 H 1.00894 * 110.99723 * 248.62434 * 7 6 5 25 25 H 1.00901 * 110.99711 * 12.58024 * 7 6 5 26 26 H 0.96698 * 113.99840 * 60.00278 * 10 8 6 27 27 H 0.96998 * 119.99472 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5314 2.1553 -0.4264 5 6 3.5789 1.2459 -0.2031 6 6 3.0042 1.5776 1.1755 7 7 3.1211 2.9654 1.6431 8 15 3.1277 0.2988 2.4689 9 8 1.7957 0.0812 3.0762 10 8 3.6507 -1.0765 1.8155 11 6 4.2937 0.8427 3.7476 12 1 4.7859 1.7999 3.6577 13 6 4.5509 0.0346 4.8347 14 7 3.9511 -1.1307 4.9444 15 14 5.7511 0.5950 6.1519 16 1 6.2875 1.9332 5.7958 17 1 5.0506 0.6737 7.4589 18 1 6.8700 -0.3767 6.2477 19 1 -0.5399 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 4.0307 0.2631 -0.3371 23 1 4.0436 2.0571 -0.7635 24 1 3.7637 3.0329 2.4179 25 1 3.3963 3.5785 0.8904 26 1 4.5203 -1.0079 1.3982 27 1 4.1318 -1.6990 5.7094 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238599330.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -75.201219 kcal Electronic energy + Delta-G solvation = -12945.670745 eV Core-core repulsion = 10590.250795 eV Total energy + Delta-G solvation = -2355.419950 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.71876 -34.71796 -32.82510 -32.63636 -30.82978 -30.00386 -25.35150 -22.55471 -20.99635 -19.52549 -17.61294 -17.29016 -15.86024 -15.24523 -15.01340 -14.29823 -13.68468 -13.17700 -12.78589 -12.43466 -12.04390 -11.78392 -11.56612 -11.23959 -11.14039 -11.07959 -10.61000 -10.56930 -10.14764 -9.54732 -9.12486 -8.90818 -8.26447 -8.06618 -7.82674 -6.45824 -5.01430 2.62829 3.06765 3.12508 3.19149 3.46913 4.01263 4.26012 4.63421 4.86832 5.05898 5.13008 5.45603 5.49925 5.72212 5.78985 6.04225 6.15793 6.46570 7.07346 7.23191 7.29885 7.34226 7.48392 7.68963 8.13718 8.58837 9.11013 9.60115 10.45741 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.044131 B = 0.011357 C = 0.010224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.324270 B = 2464.757776 C = 2737.913210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.081 4.081 4 H 0.105 0.895 5 C -0.216 4.216 6 C -0.535 4.535 7 N -0.785 5.785 8 P 2.558 2.442 9 O -1.024 7.024 10 O -0.860 6.860 11 C -1.156 5.156 12 H 0.069 0.931 13 C 0.126 3.874 14 N -0.839 5.839 15 Si 0.888 3.112 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.275 1.275 19 H 0.093 0.907 20 H 0.103 0.897 21 H 0.122 0.878 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.353 0.647 25 H 0.329 0.671 26 H 0.399 0.601 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 1.275 -9.397 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.100 4.100 4 H 0.123 0.877 5 C -0.256 4.256 6 C -0.621 4.621 7 N -0.314 5.314 8 P 2.699 2.301 9 O -1.125 7.125 10 O -0.769 6.769 11 C -1.178 5.178 12 H 0.087 0.913 13 C -0.088 4.088 14 N -0.469 5.469 15 Si 0.713 3.287 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.201 1.201 19 H 0.112 0.888 20 H 0.121 0.879 21 H 0.140 0.860 22 H 0.120 0.880 23 H 0.109 0.891 24 H 0.169 0.831 25 H 0.141 0.859 26 H 0.248 0.752 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.030 1.667 -8.869 9.083 hybrid contribution 2.811 1.451 0.027 3.164 sum 3.841 3.118 -8.842 10.132 Atomic orbital electron populations 1.23670 0.95665 1.01726 0.98367 1.22443 0.96462 0.95968 1.02105 1.21093 0.90698 0.97793 1.00389 0.87691 1.23616 0.97264 1.03269 1.01422 1.36186 1.07547 1.09396 1.08982 1.58125 1.57589 1.03497 1.12226 0.86811 0.53963 0.43887 0.45423 1.94902 1.50757 1.87975 1.78894 1.88086 1.42272 1.64954 1.81574 1.33217 1.47431 1.12092 1.25110 0.91291 1.24707 0.93624 0.93443 0.97017 1.70001 1.37315 1.09148 1.30429 0.86650 0.80852 0.79272 0.81887 1.19551 1.19632 1.20069 0.88818 0.87863 0.85977 0.88031 0.89052 0.83096 0.85903 0.75172 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 14.35 29.01 0.42 -2.17 15 2 C -0.15 -2.69 8.20 -36.03 -0.30 -2.99 15 3 C -0.08 -1.43 5.92 -91.77 -0.54 -1.98 15 4 H 0.11 1.79 8.14 -51.93 -0.42 1.36 15 5 C -0.22 -3.36 9.59 -26.73 -0.26 -3.62 15 6 C -0.53 -10.44 3.55 -67.71 -0.24 -10.68 15 7 N -0.79 -14.88 9.85 -1.86 -0.02 -14.90 15 8 P 2.56 60.95 4.05 -42.89 -0.17 60.77 15 9 O -1.02 -30.29 18.28 0.05 0.00 -30.29 15 10 O -0.86 -17.70 12.77 -2.92 -0.04 -17.74 15 11 C -1.16 -30.71 9.66 30.60 0.30 -30.41 15 12 H 0.07 1.77 6.73 -52.48 -0.35 1.42 15 13 C 0.13 3.49 5.47 -17.82 -0.10 3.39 15 14 N -0.84 -23.97 13.24 55.43 0.73 -23.24 15 15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 15 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 15 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 19 H 0.09 1.45 8.05 -52.49 -0.42 1.03 15 20 H 0.10 1.48 8.06 -52.49 -0.42 1.05 15 21 H 0.12 2.05 7.43 -52.49 -0.39 1.66 15 22 H 0.10 1.34 7.15 -51.93 -0.37 0.97 15 23 H 0.09 1.25 8.09 -51.93 -0.42 0.83 15 24 H 0.35 6.77 7.23 -39.30 -0.28 6.49 15 25 H 0.33 5.17 8.78 -39.29 -0.35 4.83 15 26 H 0.40 5.81 8.52 45.56 0.39 6.20 15 27 H 0.28 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 252.25 15.07 3.80 3.80 Total: -1.00 -35.25 252.25 -3.61 -38.86 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -2.18 Total: 15.39 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: -0.72 Total: -48.46 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.72 Total: -38.14 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.04 Total: -48.03 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 15 Polarization: 60.95 SS G_CDS: -0.17 Total: 60.77 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.25 -3.61 -38.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599330.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds