Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99999 * 2 1 4 4 H 1.08990 * 115.56356 * 334.30024 * 3 2 1 5 5 C 1.53006 * 117.49778 * 188.60564 * 3 2 1 6 6 C 1.52997 * 59.99924 * 252.51540 * 5 3 2 7 7 N 1.46908 * 117.49626 * 252.50902 * 6 5 3 8 8 P 1.82305 * 117.49976 * 107.49512 * 6 5 3 9 9 O 1.47998 * 109.46862 * 231.37295 * 8 6 5 10 10 O 1.60999 * 109.47071 * 351.37123 * 8 6 5 11 11 C 1.81395 * 109.47177 * 111.37254 * 8 6 5 12 12 H 1.08005 * 120.00039 * 0.02562 * 11 8 6 13 13 C 1.37877 * 119.99884 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99896 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99942 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47331 * 120.00220 * 15 13 11 18 18 H 1.48498 * 109.46784 * 239.99961 * 15 13 11 19 19 H 1.07997 * 119.99693 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.00205 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.99566 * 180.02562 * 2 1 3 22 22 H 1.08999 * 117.49661 * 0.02562 * 5 3 2 23 23 H 1.08999 * 117.49552 * 144.99862 * 5 3 2 24 24 H 1.00894 * 110.99723 * 248.62434 * 7 6 5 25 25 H 1.00901 * 110.99711 * 12.58024 * 7 6 5 26 26 H 0.96698 * 113.99840 * 60.00278 * 10 8 6 27 27 H 0.96998 * 119.99472 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5314 2.1553 -0.4264 5 6 3.5789 1.2459 -0.2031 6 6 3.0042 1.5776 1.1755 7 7 3.1211 2.9654 1.6431 8 15 3.1277 0.2988 2.4689 9 8 1.7957 0.0812 3.0762 10 8 3.6507 -1.0765 1.8155 11 6 4.2937 0.8427 3.7476 12 1 4.7859 1.7999 3.6577 13 6 4.5509 0.0346 4.8347 14 7 3.9511 -1.1307 4.9444 15 14 5.7511 0.5950 6.1519 16 1 6.2875 1.9332 5.7958 17 1 5.0506 0.6737 7.4589 18 1 6.8700 -0.3767 6.2477 19 1 -0.5399 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8500 -0.9353 -0.0004 22 1 4.0307 0.2631 -0.3371 23 1 4.0436 2.0571 -0.7635 24 1 3.7637 3.0329 2.4179 25 1 3.3963 3.5785 0.8904 26 1 4.5203 -1.0079 1.3982 27 1 4.1318 -1.6990 5.7094 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238599330.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -103.935847 kcal Electronic energy + Delta-G solvation = -12946.916772 eV Core-core repulsion = 10590.250795 eV Total energy + Delta-G solvation = -2356.665977 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08217 -36.40559 -34.77007 -34.08169 -32.90218 -31.38099 -27.40442 -23.83101 -22.43861 -20.90028 -19.48207 -19.03647 -17.33192 -16.98892 -16.60779 -15.75707 -15.29914 -14.55754 -14.53082 -14.08474 -13.55996 -13.40656 -13.20286 -13.03767 -12.86744 -12.60298 -12.42759 -11.87984 -11.73213 -11.48010 -11.13098 -10.41445 -10.23877 -9.83747 -9.40474 -8.48002 -7.09167 1.23967 1.24524 1.31256 1.37834 1.70668 2.34028 2.65106 2.81082 3.29888 3.68851 3.79739 4.14859 4.20218 4.47857 4.55405 4.71087 4.89967 5.18638 5.40372 5.62153 5.78021 5.92258 5.93394 6.15077 6.33309 6.97702 7.09638 7.75681 8.44403 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.044131 B = 0.011357 C = 0.010224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.324270 B = 2464.757776 C = 2737.913210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.178 4.178 3 C -0.087 4.087 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.581 4.581 7 N -0.796 5.796 8 P 2.609 2.391 9 O -1.094 7.094 10 O -0.866 6.866 11 C -1.177 5.177 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.876 5.876 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.255 1.255 19 H 0.099 0.901 20 H 0.121 0.879 21 H 0.128 0.872 22 H 0.127 0.873 23 H 0.115 0.885 24 H 0.348 0.652 25 H 0.345 0.655 26 H 0.423 0.577 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 1.538 -10.426 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C -0.106 4.106 4 H 0.127 0.873 5 C -0.225 4.225 6 C -0.666 4.666 7 N -0.327 5.327 8 P 2.746 2.254 9 O -1.190 7.190 10 O -0.780 6.780 11 C -1.200 5.200 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.508 5.508 15 Si 0.762 3.238 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.179 1.179 19 H 0.117 0.883 20 H 0.139 0.861 21 H 0.145 0.855 22 H 0.145 0.855 23 H 0.133 0.867 24 H 0.163 0.837 25 H 0.159 0.841 26 H 0.277 0.723 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.172 1.945 -9.913 10.333 hybrid contribution 2.444 1.385 0.264 2.822 sum 4.616 3.329 -9.649 11.203 Atomic orbital electron populations 1.23996 0.95722 1.02971 0.96838 1.22673 0.97166 0.96328 1.03460 1.21213 0.92270 0.97989 0.99155 0.87258 1.23821 0.95817 1.05353 0.97473 1.35808 1.11431 1.09088 1.10288 1.58113 1.57864 1.03751 1.12949 0.85107 0.51607 0.43682 0.45028 1.94847 1.53639 1.89349 1.81175 1.88027 1.44305 1.63932 1.81774 1.33734 1.47484 1.12250 1.26580 0.90974 1.25570 0.95295 0.93648 0.99327 1.70068 1.38954 1.10274 1.31520 0.85857 0.79446 0.79338 0.79205 1.19287 1.19738 1.17947 0.88284 0.86087 0.85454 0.85505 0.86653 0.83687 0.84071 0.72307 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 14.35 67.78 0.97 -4.06 15 2 C -0.18 -6.08 8.20 25.64 0.21 -5.87 15 3 C -0.09 -2.94 5.92 -11.54 -0.07 -3.01 15 4 H 0.11 3.52 8.14 -2.39 -0.02 3.50 15 5 C -0.19 -5.17 9.59 30.60 0.29 -4.87 15 6 C -0.58 -21.77 3.55 44.91 0.16 -21.61 15 7 N -0.80 -29.23 9.85 -159.81 -1.57 -30.80 15 8 P 2.61 122.85 4.05 -40.88 -0.17 122.69 15 9 O -1.09 -65.59 18.28 -20.58 -0.38 -65.97 15 10 O -0.87 -34.49 12.77 -26.22 -0.33 -34.83 15 11 C -1.18 -62.02 9.66 67.73 0.65 -61.36 15 12 H 0.07 3.65 6.73 -2.91 -0.02 3.63 15 13 C 0.07 3.95 5.47 84.65 0.46 4.41 15 14 N -0.88 -50.20 13.24 21.45 0.28 -49.92 15 15 Si 0.94 41.97 29.54 68.60 2.03 44.00 15 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 15 19 H 0.10 2.96 8.05 -2.91 -0.02 2.94 15 20 H 0.12 3.30 8.06 -2.91 -0.02 3.27 15 21 H 0.13 4.10 7.43 -2.91 -0.02 4.08 15 22 H 0.13 2.84 7.15 -2.39 -0.02 2.82 15 23 H 0.12 2.67 8.09 -2.39 -0.02 2.65 15 24 H 0.35 13.11 7.23 -89.70 -0.65 12.47 15 25 H 0.35 10.22 8.78 -89.69 -0.79 9.44 15 26 H 0.42 11.39 8.52 -74.06 -0.63 10.76 15 27 H 0.29 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -75.16 252.25 1.68 -73.48 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.86 Total: 37.73 kcal Atomic # 6 Polarization: -99.06 SS G_CDS: 2.68 Total: -96.38 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.29 Total: -80.72 kcal Atomic # 8 Polarization: -100.09 SS G_CDS: -0.71 Total: -100.80 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 15 Polarization: 122.85 SS G_CDS: -0.17 Total: 122.69 kcal Total: -75.16 1.68 -73.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599330.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.457 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds