Wall clock time and date at job start Mon Mar 30 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86795 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47409 * 275.34131 * 3 2 1 5 5 H 1.48499 * 109.47361 * 35.33836 * 3 2 1 6 6 H 1.48501 * 109.47379 * 155.33848 * 3 2 1 7 7 C 1.39916 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00259 * 341.59923 * 7 2 1 9 9 C 1.41355 * 119.99727 * 161.87683 * 7 2 1 10 10 C 1.41166 * 120.62752 * 330.11290 * 9 7 2 11 11 C 1.36849 * 118.34668 * 179.72810 * 10 9 7 12 12 C 1.38998 * 119.53465 * 0.53053 * 11 10 9 13 13 F 1.35102 * 119.37037 * 179.71098 * 12 11 10 14 14 N 1.32286 * 121.26513 * 359.73925 * 12 11 10 15 15 C 1.31554 * 121.79715 * 359.97438 * 14 12 11 16 16 C 1.50702 * 119.84386 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.46837 * 119.98428 * 16 15 14 18 18 F 1.39902 * 109.46912 * 239.98183 * 16 15 14 19 19 H 0.97000 * 119.99799 * 359.97438 * 1 2 3 20 20 H 1.08007 * 120.82273 * 0.02562 * 10 9 7 21 21 H 1.08005 * 120.23359 * 180.26519 * 11 10 9 22 22 H 1.08997 * 109.47299 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3772 2.1116 -1.3940 5 1 1.5010 2.6175 0.8098 6 1 3.5920 1.4102 0.5842 7 6 2.0080 -1.2118 -0.0005 8 1 1.5094 -2.1232 0.2943 9 6 3.3690 -1.2420 -0.3814 10 6 3.8757 -0.3110 -1.3137 11 6 5.2018 -0.3791 -1.6447 12 6 6.0023 -1.3588 -1.0691 13 9 7.3097 -1.4267 -1.4027 14 7 5.5084 -2.2265 -0.2012 15 6 4.2429 -2.2041 0.1576 16 6 3.7270 -3.2135 1.1506 17 9 3.2212 -2.5477 2.2722 18 9 2.7099 -3.9709 0.5598 19 1 -0.4850 0.8401 0.0004 20 1 3.2338 0.4394 -1.7513 21 1 5.6225 0.3208 -2.3516 22 1 4.5403 -3.8722 1.4550 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601107.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:18 Heat of formation + Delta-G solvation = -123.288563 kcal Electronic energy + Delta-G solvation = -14460.558440 eV Core-core repulsion = 11372.510598 eV Total energy + Delta-G solvation = -3088.047842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.07554 -47.80737 -46.04923 -38.76831 -34.27270 -31.92657 -30.98797 -26.86258 -24.64648 -22.40056 -21.20069 -17.96258 -17.29360 -16.96361 -16.33469 -15.74329 -15.42753 -14.87532 -14.78297 -13.71122 -13.47760 -13.01559 -12.67162 -12.45873 -12.44751 -12.27919 -11.97432 -11.47576 -11.09961 -10.94312 -10.52142 -10.08128 -9.72014 -8.95334 -8.66700 -8.01671 -7.35882 -4.90261 1.88315 2.22044 2.83526 2.96383 3.05451 3.65534 4.08204 4.31565 4.87364 4.87948 5.25612 5.48370 5.76636 5.93762 6.00019 6.24380 6.47439 6.65503 6.95652 7.13916 7.52297 7.92951 8.00081 8.29437 8.75379 9.62175 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.016491 C = 0.011027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.037474 B = 1697.495804 C = 2538.608182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.082 3.918 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.400 4.400 8 H 0.112 0.888 9 C 0.057 3.943 10 C -0.181 4.181 11 C -0.118 4.118 12 C 0.142 3.858 13 F -0.143 7.143 14 N -0.451 5.451 15 C -0.051 4.051 16 C 0.350 3.650 17 F -0.198 7.198 18 F -0.202 7.202 19 H 0.295 0.705 20 H 0.123 0.877 21 H 0.122 0.878 22 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 0.890 -0.004 3.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.427 4.427 8 H 0.130 0.870 9 C 0.051 3.949 10 C -0.207 4.207 11 C -0.139 4.139 12 C -0.013 4.013 13 F -0.123 7.123 14 N -0.163 5.163 15 C -0.194 4.194 16 C 0.295 3.705 17 F -0.179 7.179 18 F -0.184 7.184 19 H 0.105 0.895 20 H 0.141 0.859 21 H 0.140 0.860 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.490 0.361 0.359 3.527 hybrid contribution -0.189 1.382 -0.501 1.482 sum 3.301 1.743 -0.142 3.736 Atomic orbital electron populations 1.69672 1.08241 1.31356 1.29791 1.26324 0.94913 1.02174 0.90783 0.86326 0.81622 0.79230 0.79451 1.18863 1.20576 1.16490 1.19832 0.92208 0.97161 1.33481 0.87042 1.18234 0.94009 0.91678 0.90984 1.21074 0.94825 1.03391 1.01368 1.21056 0.94529 0.97939 1.00416 1.17194 0.79536 1.00045 1.04557 1.91429 1.33127 1.96400 1.91359 1.65744 1.15674 1.23460 1.11433 1.20717 0.88492 1.04431 1.05749 1.19493 0.84865 0.86511 0.79593 1.92969 1.89310 1.82711 1.52909 1.92948 1.63940 1.76552 1.84928 0.89452 0.85899 0.86016 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.64 13.93 55.55 0.77 -17.87 14 2 C 0.08 1.97 5.42 -17.34 -0.09 1.88 14 3 Si 0.91 18.78 24.53 -169.99 -4.17 14.61 14 4 H -0.26 -5.11 6.70 56.52 0.38 -4.73 14 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.24 -5.24 6.86 56.52 0.39 -4.86 14 7 C -0.40 -10.12 8.28 -37.77 -0.31 -10.43 14 8 H 0.11 2.99 6.36 -52.49 -0.33 2.66 14 9 C 0.06 1.38 5.09 -106.67 -0.54 0.84 14 10 C -0.18 -4.08 7.24 -38.97 -0.28 -4.36 14 11 C -0.12 -2.49 10.01 -39.80 -0.40 -2.89 14 12 C 0.14 3.21 8.41 -17.07 -0.14 3.06 14 13 F -0.14 -3.06 17.28 2.25 0.04 -3.02 14 14 N -0.45 -10.63 10.26 -9.09 -0.09 -10.72 14 15 C -0.05 -1.20 6.34 -81.78 -0.52 -1.72 14 16 C 0.35 7.35 5.08 36.01 0.18 7.53 14 17 F -0.20 -4.33 16.57 2.25 0.04 -4.29 14 18 F -0.20 -4.40 15.70 2.25 0.04 -4.36 14 19 H 0.29 6.33 8.30 -40.82 -0.34 5.99 14 20 H 0.12 2.60 4.82 -52.48 -0.25 2.35 14 21 H 0.12 2.13 8.06 -52.48 -0.42 1.71 14 22 H 0.11 1.88 8.11 -51.93 -0.42 1.46 14 LS Contribution 210.44 15.07 3.17 3.17 Total: -1.00 -26.18 210.44 -2.92 -29.10 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -0.60 Total: -0.54 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.11 Total: -6.08 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: 0.68 Total: -28.59 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 0.11 Total: -11.67 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.17 Total: 14.61 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -26.18 -2.92 -29.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601107.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.188 kcal (2) G-P(sol) polarization free energy of solvation -26.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds