Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48492 * 109.47114 * 239.72636 * 3 2 1 5 5 H 1.48495 * 109.47091 * 359.72830 * 3 2 1 6 6 H 1.48506 * 109.46858 * 119.72505 * 3 2 1 7 7 C 1.40440 * 120.00031 * 179.72957 * 2 1 3 8 8 H 1.07993 * 119.99875 * 355.65841 * 7 2 1 9 9 C 1.40141 * 119.99825 * 175.65746 * 7 2 1 10 10 N 1.32218 * 118.52540 * 6.98484 * 9 7 2 11 11 C 1.33675 * 121.60614 * 179.97438 * 10 9 7 12 12 C 1.40519 * 122.25335 * 180.02562 * 11 10 9 13 13 N 1.31467 * 120.00416 * 179.97438 * 12 11 10 14 14 C 1.32182 * 122.77419 * 0.05517 * 13 12 11 15 15 C 1.38421 * 121.48492 * 359.96637 * 14 13 12 16 16 C 1.39017 * 118.52113 * 0.02562 * 15 14 13 17 17 C 1.47201 * 122.67316 * 180.02562 * 16 15 14 18 18 O 1.21646 * 121.32392 * 359.97438 * 17 16 15 19 19 N 1.35464 * 117.34083 * 179.68524 * 17 16 15 20 20 H 0.97000 * 119.87837 * 180.25038 * 19 17 16 21 21 H 0.97000 * 119.99686 * 185.06392 * 1 2 3 22 22 H 1.08001 * 119.99663 * 359.97438 * 12 11 10 23 23 H 1.08000 * 119.25466 * 179.97438 * 14 13 12 24 24 H 1.07996 * 120.73734 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0978 1.6936 -1.2091 5 1 1.2741 2.7464 -0.0066 6 1 3.0878 1.6993 1.2159 7 6 2.0074 -1.2162 0.0057 8 1 1.4697 -2.1498 0.0809 9 6 3.4058 -1.2184 -0.0861 10 7 4.0436 -0.0613 -0.0358 11 6 5.3761 0.0083 -0.1171 12 6 6.0678 1.2303 -0.0646 13 7 7.3797 1.2472 -0.1483 14 6 8.1023 0.1487 -0.2838 15 6 7.5121 -1.1018 -0.3456 16 6 6.1270 -1.1869 -0.2625 17 6 5.4048 -2.4685 -0.3178 18 8 5.9976 -3.5236 -0.4408 19 7 4.0544 -2.4263 -0.2202 20 1 3.5419 -3.2494 -0.2486 21 1 -0.4850 -0.8368 0.0742 22 1 5.5217 2.1556 0.0445 23 1 9.1774 0.2287 -0.3474 24 1 8.1142 -1.9915 -0.4560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238618360.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = -26.059492 kcal Electronic energy + Delta-G solvation = -13931.589768 eV Core-core repulsion = 11421.907586 eV Total energy + Delta-G solvation = -2509.682182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.26499 -39.87867 -38.75812 -35.86424 -34.66824 -33.07051 -31.54455 -28.51487 -26.12666 -24.22219 -23.36744 -20.98720 -20.28332 -19.42406 -18.48638 -16.99228 -16.83752 -16.74733 -15.71234 -15.55629 -15.23681 -14.97442 -14.76607 -14.20042 -14.04844 -13.40645 -12.50121 -12.48865 -11.97864 -11.74576 -11.67438 -11.07964 -10.70979 -10.49444 -9.85271 -9.64675 -9.20960 -7.35171 -0.22559 -0.10082 1.18340 1.63239 1.69536 1.90162 2.10167 2.12065 2.50056 2.75326 3.30437 3.34952 3.55532 3.72773 3.91881 4.25167 4.46585 4.78433 4.90884 4.93119 5.08019 5.19785 5.50089 5.59081 5.77905 5.88708 6.13844 6.83068 7.06136 7.37660 7.68721 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.033366 B = 0.013390 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.968052 B = 2090.574025 C = 2917.716252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.036 3.964 3 Si 1.182 2.818 4 H -0.289 1.289 5 H -0.330 1.330 6 H -0.284 1.284 7 C -0.447 4.447 8 H 0.105 0.895 9 C 0.438 3.562 10 N -0.650 5.650 11 C 0.182 3.818 12 C 0.046 3.954 13 N -0.443 5.443 14 C -0.002 4.002 15 C -0.057 4.057 16 C -0.270 4.270 17 C 0.561 3.439 18 O -0.564 6.564 19 N -0.660 5.660 20 H 0.418 0.582 21 H 0.297 0.703 22 H 0.166 0.834 23 H 0.188 0.812 24 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -0.030 -0.026 5.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.190 4.190 3 Si 1.016 2.984 4 H -0.218 1.218 5 H -0.264 1.264 6 H -0.212 1.212 7 C -0.482 4.482 8 H 0.123 0.877 9 C 0.211 3.789 10 N -0.386 5.386 11 C 0.057 3.943 12 C -0.122 4.122 13 N -0.152 5.152 14 C -0.154 4.154 15 C -0.078 4.078 16 C -0.284 4.284 17 C 0.354 3.646 18 O -0.444 6.444 19 N -0.304 5.304 20 H 0.257 0.743 21 H 0.110 0.890 22 H 0.183 0.817 23 H 0.205 0.795 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.362 2.384 -0.046 5.869 hybrid contribution -0.533 -3.972 -0.049 4.008 sum 4.829 -1.588 -0.095 5.085 Atomic orbital electron populations 1.70593 1.08269 1.34153 1.26177 1.28480 0.95194 1.07180 0.88136 0.81295 0.69724 0.67741 0.79659 1.21790 1.26398 1.21207 1.20891 0.89076 0.98285 1.39936 0.87689 1.19495 0.92831 0.79441 0.87114 1.66830 1.07984 1.21308 1.42520 1.19806 0.89975 0.94178 0.90372 1.22663 0.89457 0.95743 1.04349 1.67197 1.07221 1.33122 1.07642 1.22825 1.01052 0.86332 1.05240 1.22029 0.92200 1.00405 0.93175 1.20649 0.96694 0.92601 1.18489 1.18445 0.81864 0.89247 0.75009 1.90737 1.68433 1.32926 1.52273 1.44494 1.07543 1.10923 1.67476 0.74318 0.89038 0.81710 0.79484 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.94 13.64 21.91 0.30 -34.64 14 2 C 0.04 1.64 5.52 85.42 0.47 2.11 14 3 Si 1.18 50.82 25.43 68.60 1.74 52.56 14 4 H -0.29 -12.76 6.89 99.48 0.69 -12.08 14 5 H -0.33 -14.04 7.11 99.48 0.71 -13.33 14 6 H -0.28 -12.34 6.98 99.48 0.69 -11.65 14 7 C -0.45 -19.63 9.63 23.27 0.22 -19.41 14 8 H 0.11 4.31 8.05 -2.91 -0.02 4.28 14 9 C 0.44 19.42 7.30 133.78 0.98 20.40 14 10 N -0.65 -29.92 4.28 -186.54 -0.80 -30.72 14 11 C 0.18 7.98 6.64 40.33 0.27 8.25 14 12 C 0.05 1.83 11.27 85.30 0.96 2.79 14 13 N -0.44 -16.21 10.29 -193.86 -1.99 -18.20 14 14 C 0.00 -0.07 11.17 84.68 0.95 0.88 14 15 C -0.06 -2.01 9.77 22.50 0.22 -1.79 14 16 C -0.27 -11.33 5.91 -19.83 -0.12 -11.44 14 17 C 0.56 24.08 8.01 86.49 0.69 24.77 14 18 O -0.56 -25.26 17.56 -4.18 -0.07 -25.34 14 19 N -0.66 -26.82 5.34 -311.16 -1.66 -28.48 14 20 H 0.42 14.68 8.74 -92.71 -0.81 13.87 14 21 H 0.30 12.51 8.72 -92.71 -0.81 11.70 14 22 H 0.17 6.10 8.06 -2.91 -0.02 6.07 14 23 H 0.19 4.36 8.06 -2.91 -0.02 4.34 14 24 H 0.15 4.62 7.90 -2.91 -0.02 4.60 14 Total: -1.00 -52.98 222.30 2.53 -50.44 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.37 Total: 7.81 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 4.64 Total: 26.56 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.16 Total: -112.05 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 1.74 Total: 52.56 kcal Total: -52.98 2.53 -50.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618360.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.384 kcal (2) G-P(sol) polarization free energy of solvation -52.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds