Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99890 * 2 1 4 4 H 1.48503 * 109.46856 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47058 * 120.00134 * 3 2 1 6 6 H 1.48494 * 109.46910 * 240.00227 * 3 2 1 7 7 C 1.37875 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 186.62509 * 7 2 1 9 9 C 1.50700 * 120.00327 * 6.62019 * 7 2 1 10 10 H 1.09004 * 109.46590 * 34.99977 * 9 7 2 11 11 N 1.46897 * 109.47131 * 275.00999 * 9 7 2 12 12 C 1.50696 * 109.47349 * 155.00091 * 9 7 2 13 13 C 1.33409 * 122.53924 * 99.71502 * 12 9 7 14 14 S 1.75880 * 109.60302 * 179.90727 * 13 12 9 15 15 C 1.75880 * 90.98501 * 0.29919 * 14 13 12 16 16 C 1.33446 * 109.59224 * 359.83028 * 15 14 13 17 17 Cl 1.73604 * 122.54250 * 179.97438 * 16 15 14 18 18 H 0.97008 * 119.99878 * 177.60961 * 1 2 3 19 19 H 1.00905 * 110.99840 * 305.39857 * 11 9 7 20 20 H 1.00899 * 111.00679 * 69.35325 * 11 9 7 21 21 H 1.07998 * 125.19899 * 0.02562 * 13 12 9 22 22 H 1.07993 * 125.20431 * 179.83500 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1971 0.1074 9 6 1.2587 -2.4948 -0.1516 10 1 0.4111 -2.3518 -0.8219 11 7 0.7742 -2.9369 1.1628 12 6 2.1815 -3.5394 -0.7244 13 6 2.7842 -4.4574 0.0331 14 16 3.7746 -5.5001 -0.9795 15 6 3.3081 -4.5991 -2.4161 16 6 2.4727 -3.6157 -2.0759 17 17 1.8026 -2.5152 -3.2394 18 1 -0.4850 -0.8394 -0.0350 19 1 1.5314 -2.9918 1.8276 20 1 0.0403 -2.3321 1.5000 21 1 2.6786 -4.5478 1.1041 22 1 3.6459 -4.8096 -3.4200 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238624655.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 16.984783 kcal Electronic energy + Delta-G solvation = -10613.865856 eV Core-core repulsion = 8514.077485 eV Total energy + Delta-G solvation = -2099.788372 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.002 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.10346 -35.63236 -34.15555 -31.27709 -28.43812 -26.04375 -23.68999 -21.25220 -18.34731 -17.57844 -16.73895 -15.24465 -14.47652 -13.80168 -13.39254 -13.18911 -12.46407 -12.15327 -12.02951 -11.81458 -11.04299 -10.79660 -10.75067 -10.21116 -10.17428 -9.73268 -9.47044 -8.67919 -8.17689 -7.83259 -7.31490 -6.44540 -4.22857 1.42344 1.83643 2.32236 3.19752 3.25832 3.39001 3.41044 3.58475 4.45525 5.21252 5.31602 5.73595 5.91529 6.17479 6.55376 6.66615 6.81056 7.31942 7.87349 8.23322 8.43269 8.63336 8.73019 9.49019 10.88674 Molecular weight = 217.00amu Principal moments of inertia in cm(-1) A = 0.034251 B = 0.011648 C = 0.010324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.297645 B = 2403.201960 C = 2711.403407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.615 4.615 8 H 0.048 0.952 9 C 0.242 3.758 10 H 0.059 0.941 11 N -0.854 5.854 12 C -0.047 4.047 13 C -0.202 4.202 14 S 0.068 5.932 15 C -0.228 4.228 16 C -0.018 4.018 17 Cl -0.047 7.047 18 H 0.270 0.730 19 H 0.321 0.679 20 H 0.334 0.666 21 H 0.166 0.834 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -7.370 -2.699 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.173 4.173 3 Si 0.892 3.108 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.656 4.656 8 H 0.066 0.934 9 C 0.131 3.869 10 H 0.077 0.923 11 N -0.381 5.381 12 C -0.059 4.059 13 C -0.336 4.336 14 S 0.329 5.671 15 C -0.364 4.364 16 C -0.059 4.059 17 Cl -0.019 7.019 18 H 0.082 0.918 19 H 0.131 0.869 20 H 0.145 0.855 21 H 0.184 0.816 22 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.845 -7.571 -2.891 9.992 hybrid contribution -0.238 0.585 -0.164 0.653 sum 5.606 -6.986 -3.055 9.464 Atomic orbital electron populations 1.70850 1.06796 1.30869 1.45358 1.25787 0.96341 1.02442 0.92778 0.83614 0.75077 0.75432 0.76708 1.20720 1.21470 1.21228 1.22370 0.95334 0.91880 1.55971 0.93368 1.17908 0.92363 0.88326 0.88308 0.92300 1.59535 1.15041 1.57529 1.06037 1.19098 0.99269 0.96963 0.90521 1.25094 1.04432 1.00886 1.03214 1.83851 1.50211 1.34990 0.98044 1.25255 1.06475 1.01880 1.02763 1.19790 1.00110 0.94527 0.91431 1.98346 1.84218 1.62234 1.57090 0.91832 0.86866 0.85458 0.81632 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.62 55.43 0.75 -24.99 14 2 C 0.03 0.89 5.45 -17.82 -0.10 0.80 14 3 Si 1.06 24.67 29.91 -169.99 -5.08 19.58 14 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 14 7 C -0.62 -16.34 8.54 -34.44 -0.29 -16.64 14 8 H 0.05 1.33 7.81 -52.48 -0.41 0.92 14 9 C 0.24 5.87 2.22 -70.02 -0.16 5.71 14 10 H 0.06 1.58 6.64 -51.93 -0.34 1.23 14 11 N -0.85 -18.85 8.68 -6.65 -0.06 -18.91 14 12 C -0.05 -1.02 4.97 -106.23 -0.53 -1.55 14 13 C -0.20 -3.81 10.33 29.04 0.30 -3.51 14 14 S 0.07 1.06 23.34 -107.50 -2.51 -1.45 14 15 C -0.23 -3.86 11.08 29.06 0.32 -3.54 14 16 C -0.02 -0.36 6.26 -41.17 -0.26 -0.61 14 17 Cl -0.05 -0.96 28.23 -51.86 -1.46 -2.43 14 18 H 0.27 7.66 6.22 -40.82 -0.25 7.40 14 19 H 0.32 6.71 7.89 -39.29 -0.31 6.40 14 20 H 0.33 7.61 8.45 -39.29 -0.33 7.28 14 21 H 0.17 2.94 7.02 -52.49 -0.37 2.57 14 22 H 0.16 2.31 8.06 -52.49 -0.42 1.89 14 LS Contribution 226.04 15.07 3.41 3.41 Total: -1.00 -27.80 226.04 -6.90 -34.70 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -1.24 Total: 9.42 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.71 Total: -19.34 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.70 Total: -43.90 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.46 Total: -2.43 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.80 -6.90 -34.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624655.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.688 kcal (2) G-P(sol) polarization free energy of solvation -27.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds