Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86801 * 119.99636 * 2 1 4 4 H 1.48503 * 109.46650 * 85.10237 * 3 2 1 5 5 H 1.48496 * 109.46954 * 205.09431 * 3 2 1 6 6 H 1.48496 * 109.47401 * 325.09768 * 3 2 1 7 7 C 1.40023 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99590 * 187.22641 * 7 2 1 9 9 C 1.41288 * 120.00119 * 7.22905 * 7 2 1 10 10 C 1.40728 * 119.79243 * 186.93195 * 9 7 2 11 11 C 1.38012 * 119.02294 * 179.79007 * 10 9 7 12 12 C 1.50696 * 120.71281 * 180.20359 * 11 10 9 13 13 F 1.39901 * 109.47102 * 300.27865 * 12 11 10 14 14 F 1.39897 * 109.47355 * 60.28226 * 12 11 10 15 15 C 1.39263 * 118.56893 * 0.47339 * 11 10 9 16 16 F 1.35099 * 120.24970 * 179.71988 * 15 11 10 17 17 C 1.39095 * 119.49689 * 359.75289 * 15 11 10 18 18 N 1.31373 * 120.95526 * 0.02562 * 17 15 11 19 19 H 0.96995 * 120.00224 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.48711 * 359.97438 * 10 9 7 21 21 H 1.08999 * 109.47000 * 180.28004 * 12 11 10 22 22 H 1.07998 * 119.51917 * 180.02562 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3854 2.1062 1.3950 5 1 3.5870 1.4126 -0.5938 6 1 1.4946 2.6206 -0.8011 7 6 2.0077 -1.2127 -0.0005 8 1 3.0813 -1.2164 0.1171 9 6 1.3097 -2.4313 -0.1551 10 6 1.9939 -3.6524 -0.0093 11 6 1.2956 -4.8333 -0.1593 12 6 1.9893 -6.1624 -0.0068 13 9 3.0189 -6.2617 -0.9488 14 9 2.5246 -6.2640 1.2817 15 6 -0.0627 -4.7702 -0.4601 16 9 -0.7779 -5.9052 -0.6198 17 6 -0.6772 -3.5297 -0.5956 18 7 0.0052 -2.4174 -0.4444 19 1 -0.4850 0.8400 0.0004 20 1 3.0493 -3.6651 0.2195 21 1 1.2718 -6.9672 -0.1666 22 1 -1.7307 -3.4804 -0.8285 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238646214.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -139.457842 kcal Electronic energy + Delta-G solvation = -14099.679677 eV Core-core repulsion = 11010.930683 eV Total energy + Delta-G solvation = -3088.748995 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.06937 -49.43078 -48.02113 -40.15087 -35.68417 -33.62948 -31.89186 -27.65552 -27.46776 -23.78066 -22.95688 -19.71166 -18.91203 -18.28097 -18.07809 -17.80846 -16.86501 -16.54263 -16.26579 -15.46386 -14.95775 -14.70765 -14.42079 -14.39939 -14.02823 -13.93409 -13.28192 -12.93393 -12.84981 -12.57338 -12.20972 -11.84932 -11.24513 -10.59673 -9.84062 -9.65407 -8.55053 -6.65621 0.44723 0.56837 1.41861 1.48745 1.57457 2.18321 2.60796 2.70680 3.16426 3.48929 3.56347 3.78213 4.03317 4.04749 4.44551 4.60828 5.00902 5.10144 5.13878 5.31532 5.82016 6.08559 6.46672 6.69835 7.81462 8.26809 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.040616 B = 0.009282 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.216190 B = 3015.836142 C = 3522.097632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.266 1.266 7 C -0.441 4.441 8 H 0.100 0.900 9 C 0.212 3.788 10 C -0.224 4.224 11 C -0.135 4.135 12 C 0.322 3.678 13 F -0.205 7.205 14 F -0.205 7.205 15 C -0.100 4.100 16 F -0.151 7.151 17 C 0.108 3.892 18 N -0.491 5.491 19 H 0.289 0.711 20 H 0.121 0.879 21 H 0.147 0.853 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 -3.468 -0.175 3.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.177 1.177 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.118 0.882 9 C 0.089 3.911 10 C -0.247 4.247 11 C -0.142 4.142 12 C 0.269 3.731 13 F -0.186 7.186 14 F -0.186 7.186 15 C -0.125 4.125 16 F -0.131 7.131 17 C -0.060 4.060 18 N -0.204 5.204 19 H 0.100 0.900 20 H 0.139 0.861 21 H 0.164 0.836 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.276 -2.556 -0.243 2.867 hybrid contribution 0.548 -0.453 0.123 0.721 sum 1.823 -3.009 -0.120 3.520 Atomic orbital electron populations 1.70094 1.09159 1.30384 1.26996 1.27073 0.95752 1.04881 0.92216 0.85012 0.79094 0.75046 0.79569 1.18437 1.17686 1.19052 1.20140 0.96000 0.90189 1.40775 0.88159 1.19021 0.88741 0.93104 0.90205 1.21656 1.00452 0.91859 1.10739 1.20479 0.93693 0.95718 1.04318 1.20348 0.84256 0.97091 0.71428 1.92963 1.62940 1.97240 1.65441 1.92963 1.88236 1.97224 1.40216 1.18047 0.89805 0.83331 1.21275 1.91306 1.77872 1.48952 1.94927 1.23142 1.00706 0.86681 0.95436 1.68714 1.08202 1.26675 1.16762 0.90048 0.86076 0.83601 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.63 11.57 21.84 0.25 -37.37 14 2 C 0.02 1.17 5.47 85.29 0.47 1.63 14 3 Si 0.99 35.21 29.57 68.60 2.03 37.24 14 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 14 5 H -0.25 -8.69 7.11 99.48 0.71 -7.99 14 6 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 7 C -0.44 -22.45 9.13 23.45 0.21 -22.24 14 8 H 0.10 4.70 7.86 -2.91 -0.02 4.68 14 9 C 0.21 11.26 6.52 40.23 0.26 11.52 14 10 C -0.22 -10.73 9.44 22.82 0.22 -10.51 14 11 C -0.13 -5.89 5.40 -19.67 -0.11 -5.99 14 12 C 0.32 11.53 5.47 71.23 0.39 11.92 14 13 F -0.20 -7.46 17.27 44.97 0.78 -6.68 14 14 F -0.21 -7.53 17.27 44.97 0.78 -6.75 14 15 C -0.10 -4.39 7.32 22.72 0.17 -4.23 14 16 F -0.15 -5.89 16.31 44.97 0.73 -5.16 14 17 C 0.11 5.04 11.17 84.97 0.95 5.99 14 18 N -0.49 -26.15 7.96 -188.89 -1.50 -27.66 14 19 H 0.29 12.98 8.29 -92.71 -0.77 12.21 14 20 H 0.12 5.47 8.06 -2.91 -0.02 5.45 14 21 H 0.15 4.29 7.23 -2.39 -0.02 4.27 14 22 H 0.16 6.42 8.06 -2.91 -0.02 6.40 14 Total: -1.00 -56.63 220.69 6.89 -49.75 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.26 Total: 8.54 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 2.56 Total: -11.91 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.25 Total: -65.03 kcal Atomic # 9 Polarization: -20.88 SS G_CDS: 2.29 Total: -18.59 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -56.63 6.89 -49.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238646214.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.710 kcal (2) G-P(sol) polarization free energy of solvation -56.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds