Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48506 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47244 * 299.99759 * 3 2 1 6 6 H 1.48500 * 109.47126 * 60.00369 * 3 2 1 7 7 C 1.40041 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.41371 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.40616 * 119.81154 * 180.26918 * 9 7 2 11 11 C 1.38216 * 119.03989 * 180.20486 * 10 9 7 12 12 C 1.50706 * 120.68531 * 179.80575 * 11 10 9 13 13 F 1.39900 * 109.46715 * 209.71596 * 12 11 10 14 14 F 1.39897 * 109.47068 * 329.71507 * 12 11 10 15 15 C 1.38842 * 118.62671 * 359.52657 * 11 10 9 16 16 C 1.39137 * 119.52508 * 0.25519 * 15 11 10 17 17 F 1.35102 * 119.51982 * 179.97438 * 16 15 11 18 18 N 1.31589 * 120.95035 * 359.97438 * 16 15 11 19 19 H 0.96993 * 120.00296 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.47895 * 359.97438 * 10 9 7 21 21 H 1.09000 * 109.47161 * 89.71752 * 12 11 10 22 22 H 1.07997 * 120.23668 * 180.27324 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3007 -2.4371 0.0005 10 6 2.0077 -3.6525 0.0068 11 6 1.3006 -4.8401 0.0024 12 6 2.0207 -6.1640 0.0045 13 9 1.2402 -7.1203 -0.6539 14 9 3.2471 -6.0288 -0.6549 15 6 -0.0868 -4.7882 0.0020 16 6 -0.7267 -3.5527 0.0006 17 9 -2.0768 -3.5022 -0.0004 18 7 -0.0359 -2.4327 0.0001 19 1 -0.4850 0.8400 0.0004 20 1 3.0877 -3.6580 0.0112 21 1 2.1940 -6.4817 1.0326 22 1 -0.6652 -5.7002 0.0030 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238676797.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = -136.226420 kcal Electronic energy + Delta-G solvation = -14041.072621 eV Core-core repulsion = 10952.463751 eV Total energy + Delta-G solvation = -3088.608870 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.91954 -49.67290 -47.94038 -40.13770 -35.75600 -33.57036 -31.83444 -28.02388 -27.27808 -23.60499 -22.90995 -19.81244 -18.68761 -18.34956 -18.10182 -17.06396 -16.79393 -16.63766 -16.62182 -15.99351 -14.90370 -14.72975 -14.34202 -14.24558 -13.95466 -13.62130 -13.17035 -12.87141 -12.83242 -12.59218 -12.19449 -11.83341 -11.32508 -10.41663 -9.92699 -9.69538 -8.48008 -6.74447 0.53985 0.59679 1.41351 1.48573 1.58659 2.17560 2.59735 2.81970 3.15737 3.37344 3.55822 3.79927 4.10095 4.40832 4.53301 4.63295 5.04988 5.16143 5.28695 5.46136 5.82553 6.06261 6.50049 6.68788 7.71486 8.27991 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.035485 B = 0.009814 C = 0.007769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.886512 B = 2852.263455 C = 3603.252622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.017 3.983 3 Si 0.997 3.003 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.438 4.438 8 H 0.111 0.889 9 C 0.240 3.760 10 C -0.249 4.249 11 C -0.085 4.085 12 C 0.325 3.675 13 F -0.207 7.207 14 F -0.206 7.206 15 C -0.314 4.314 16 C 0.302 3.698 17 F -0.142 7.142 18 N -0.548 5.548 19 H 0.284 0.716 20 H 0.135 0.865 21 H 0.166 0.834 22 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -4.480 1.619 6.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.206 4.206 3 Si 0.816 3.184 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.129 0.871 9 C 0.116 3.884 10 C -0.271 4.271 11 C -0.091 4.091 12 C 0.272 3.728 13 F -0.188 7.188 14 F -0.187 7.187 15 C -0.338 4.338 16 C 0.141 3.859 17 F -0.121 7.121 18 N -0.268 5.268 19 H 0.095 0.905 20 H 0.153 0.847 21 H 0.183 0.817 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.111 -3.589 1.584 5.683 hybrid contribution -0.079 -0.109 -0.218 0.256 sum 4.032 -3.698 1.366 5.639 Atomic orbital electron populations 1.70232 1.09448 1.29951 1.27375 1.27227 0.95699 1.05358 0.92286 0.84928 0.79678 0.74994 0.78789 1.16697 1.19292 1.19057 1.20279 0.95678 0.89540 1.41337 0.87126 1.18713 0.86067 0.93945 0.89632 1.21746 1.00457 0.91721 1.13226 1.20392 0.93659 0.95100 0.99988 1.20481 0.74315 0.83767 0.94253 1.92948 1.75664 1.65779 1.84459 1.92955 1.45110 1.96267 1.84398 1.20785 0.94495 0.96403 1.22152 1.18765 0.78016 0.91554 0.97541 1.91447 1.29499 1.97342 1.93844 1.68024 1.09771 1.27055 1.21956 0.90470 0.84686 0.81709 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.81 11.46 21.84 0.25 -39.56 14 2 C 0.02 0.84 5.50 85.29 0.47 1.31 14 3 Si 1.00 35.61 29.56 68.60 2.03 37.64 14 4 H -0.24 -8.11 7.11 99.48 0.71 -7.40 14 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 14 6 H -0.27 -9.21 7.11 99.48 0.71 -8.50 14 7 C -0.44 -22.16 9.14 23.48 0.21 -21.94 14 8 H 0.11 5.00 7.85 -2.91 -0.02 4.98 14 9 C 0.24 12.77 6.55 40.22 0.26 13.03 14 10 C -0.25 -11.27 9.21 22.85 0.21 -11.06 14 11 C -0.08 -3.47 5.75 -19.72 -0.11 -3.59 14 12 C 0.32 10.04 5.67 71.24 0.40 10.44 14 13 F -0.21 -6.69 16.56 44.97 0.74 -5.95 14 14 F -0.21 -6.71 16.57 44.97 0.75 -5.96 14 15 C -0.31 -13.85 9.48 22.63 0.21 -13.63 14 16 C 0.30 15.55 8.41 84.95 0.71 16.26 14 17 F -0.14 -7.05 17.29 44.97 0.78 -6.27 14 18 N -0.55 -31.05 7.87 -190.14 -1.50 -32.54 14 19 H 0.28 13.59 8.29 -92.71 -0.77 12.82 14 20 H 0.14 5.47 7.69 -2.91 -0.02 5.45 14 21 H 0.17 3.58 8.14 -2.39 -0.02 3.56 14 22 H 0.14 5.33 7.68 -2.91 -0.02 5.31 14 Total: -1.00 -60.95 219.99 6.69 -54.26 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.26 Total: 7.55 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 2.38 Total: -9.17 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.25 Total: -72.10 kcal Atomic # 9 Polarization: -20.45 SS G_CDS: 2.27 Total: -18.18 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -60.95 6.69 -54.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238676797.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.965 kcal (2) G-P(sol) polarization free energy of solvation -60.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds